11email: [email protected]
Phase resolved spectrum of the Crab pulsar from NICER
Abstract
Context. The high energy emission regions of rotation powered pulsars are studied using folded light curves (FLCs) and phase resolved spectra (PRS).
Aims. This work uses the NICER observatory to obtain the highest resolution FLC and PRS of the Crab pulsar at soft X-ray energies.
Methods. NICER has accumulated about ksec of data on the Crab pulsar. The data are processed using the standard analysis pipeline. Stringent filtering is done for spectral analysis. The individual detectors are calibrated in terms of long time light curve (LTLC), raw spectrum and deadtime. The arrival times of the photons are referred to the solar system’s barycenter and the rotation frequency and its time derivative are used to derive the rotation phase of each photon.
Results. The LTLCs, raw spectra and deadtimes of the individual detectors are statistically similar; the latter two show no evolution with epoch; detector deadtime is independent of photon energy. The deadtime for the Crab pulsar, taking into account the two types of deadtime, is only % to % larger than that obtained using the cleaned events. Detector behaves slightly differently from the rest, but can be used for spectral work. The PRS of the two peaks of the Crab pulsar are obtained at a resolution of better than in rotation phase. The FLC very close to the first peak rises slowly and falls faster. The spectral index of the PRS is almost constant very close to the first peak.
Conclusions. The high resolution FLC and PRS of the peaks of the Crab pulsar provide important constraints for the formation of caustics in the emission zone.
Key Words.:
Stars: neutron – Stars: pulsars: general – Stars: pulsars: individual PSR J0534+2200 – Stars: pulsars: individual PSR B0531+21 – X-rays: general –1 Introduction
Although rotation powered pulsars (RPPs) were first discovered at radio wavelengths, they emit mainly at the much higher X-ray and -ray energies. So observations at these high energies are required to understand their emission mechanism. Further, the radio emission of RPPs is believed to be due to a coherent radiation mechanism, which is relatively difficult to study. In contrast, the high energy emission is relatively simple – ultra relativistic charges traveling along magnetic field lines and emitting very narrow beams of radiation along the direction of their momentum. Therefore a realistic magnetic field line geometry (e.g. dipole field with swept back field lines close to the light cylinder) is sufficient to qualitatively reproduce the observed folded light curve (FLC) of RPPs. Such work gained speed after the launch of the Fermi Gamma-Ray Space Telescope in 2008 (Atwood et al., 2007); see also Harding (2016).
The earliest magnetic field geometry used for modeling was the static dipole. More realistic magnetic fields were explored as time progressed – the vacuum retarded dipole, the aligned force-free magnetosphere, in which the magnetic and rotation axes are parallel, and the oblique force-free magnetosphere, in which they are not parallel. The force-free magnetospheres do not have any particle acceleration by definition. Therefore dissipative magnetospheres were invoked, that had a finite conductivity and allowed for some acceleration. However, the dissipative models did not model self-consistently the source of particles that provide the conductivity. This led to modeling of pulsar magnetospheres using particle-in-cell codes, which are still in their infancy; see Harding 2016 and references therein.
The magnetospheric models were coupled with different sites of particle acceleration, known as “gaps”, in which space charge deficiency leads to residual electric fields and therefore to particle acceleration. The popular gaps are the polar cap gap (PC), the outer gap (OG), the slot gap (SG) and its associated two pole caustic (TPC) model, and the separatrix layer (SL) model (see Harding 2016 and references therein).
Most of the above work was done at -ray energies. While each model explained qualitatively the FLCs of some RPPs, none of them explained the FLCs of all Fermi RPPs (Bai & Spitkovsky, 2010; Romani & Watters, 2010; Kalapotharakos et al., 2014; Harding, 2016; Pierbattista et al., 2016). Further, quantitative comparison of the observed and modeled FLCs (in terms of ) was often quite poor (Harding, 2016). However, several of the above models were able to reproduce the typical double peaked FLC even from a single magnetic pole of the RPP. They were able to reproduce the sharp peaks in terms of caustics, in which photons from different parts of the emission region arrived at the same rotation phase simultaneously, due to a combination of light travel time and special relativistic aberration (Cheng et al., 1986). However, analysis of the phase resolved spectrum (PRS) has lagged behind the analysis of the FLC in most of these models, until recently (Cheng et al., 2000; Brambilla et al., 2014).
The most popular RPP for such work is the Crab pulsar. It is a very luminous source, so it has been observed right from radio to -ray energies. Further, it is probably the only RPP for which the FLCs at most energies are not only similar in appearance, but are also aligned in rotation phase (except for the radio precursor; Abdo et al. 2010). This implies that the geometry of the emission region is common for most energies in the Crab pulsar. Therefore modeling its FLC at X-ray energies may be as useful as modeling it at -ray energies. This work obtains the high phase resolution (large number of bins per rotation period) FLC and PRS of the Crab pulsar at soft X-ray energies ( keV) using the Neutron star Interior Composition Explorer (NICER) satellite observatory (Arzoumanian et al., 2014; Gendreau et al., 2016), which is the main result of this work. Here the focus will be mainly on the formation of caustics or cusps in the FLC of the Crab pulsar at soft X-ray energies.
Cheng et al. (1986) and Romani & Yadigaroglu (1995) were one of the earliest theorists to demonstrate the formation of sharp peaks in the ray FLC of RPPs. Using a static dipole magnetic field, Cheng et al. (1986) showed that sharp peaks can form in the FLC due to photons from a large portion of the outer gap (OG) arriving at a common rotation phase (see their Figure ). These so called “caustics” or “cusps” form when one takes into account the combined effect of the special relativistic aberration and light travel time on a photon. Romani & Yadigaroglu (1995) demonstrated the same using the more sophisticated vacuum retarded dipole (VRD) magnetic field. Clearly the sweep back of the magnetic field lines in a VRD did not affect the process of caustic formation. These developments enabled the explanation of the well separated double peaks in ray FLCs in terms of emission from a single magnetic pole of the RPP.
Then the Fermi Gamma-Ray Space Telescope obtained high quality ray FLCs of several RPPs. This enabled statistical testing of more refined theoretical models of the formation of FLC. Romani & Watters (2010) tested three types of magnetospheric structures and two locations of the emission zone. The three magnetospheric structures were static magnetic field, modified VRD which they label “atlas” field, and “pseudo force free” (PFF) magnetosphere, which contains charges, but no currents. The two locations were the two pole caustic (TPC) and the outer gap (OG). They concluded that statistically OG was preferable to TPC. However, their best-fit values of , the angle between rotation and magnetic axis, and , the angle between rotation axis and line of sight, differ significantly from independently known values for some RPPs. In the work of Romani & Watters (2010) caustics are caused by piling up in phase of emission from different regions (altitudes) of the magnetosphere.
Bai & Spitkovsky (2010) use only the three dimensional force free magnetosphere (FF), which by definition has no particle acceleration; and they explore the TPC and OG locations. The FF magnetosphere has a conducting plasma, and the charges and currents are solved self-consistently. They conclude that both the TPC and OG models are unsuitable, but favor a modified version of OG which they call the “separatrix layer” gap (SL). In this model caustics form by an entirely different process – that of radiation from the same magnetic field line piling up in phase. This is possible because outside the light cylinder the magnetic field lines are almost radial, in the so called “split monopolar” geometry. They have named this kind of caustic formation the “sky map stagnation” (SMS) effect. These caustics form in the outer magnetosphere. Each magnetic pole gives rise to one peak in the FLC and the rise of flux to the peak as a function of rotation phase is usually faster than its drop after the peak.
There are two important aspects of caustic formation. First, it depends sensitively upon the geometry of the magnetic field lines, since that determines the amount of aberration and light travel time (Bai & Spitkovsky, 2010). Second, as emphasized by Bai & Spitkovsky (2010), the magnetic field structure at the light cylinder determines the shape of the polar cap on the surface of the neutron star, which in turn determines the shape and extent of the region of emission of photons, which affects the formation of caustics.
Kalapotharakos et al. (2014) use a dissipative magnetosphere, using different values of conductivity ; when , the situation is similar to the VRD magnetosphere, while implies the FF magnetosphere. For small values of they find that the emission is mainly from the inner magnetosphere and the peaks in the FLC are not sharp. For large values of the emission is mainly from the outer magnetosphere and the peaks can be sharp. For very large values of the emission is entirely from the outer magnetosphere and is very non-uniform, so complex FLCs are obtained. They favor a hybrid model that is FF inside the light cylinder and dissipative outside (FIDO). In terms of caustic formation, the FIDO model is essentially two pole, like in the SG model, but without emission at low altitudes or at off peak phases, like in the OG model.
The above is a brief summary of the mechanism of caustic formation in high energy FLCs of RPPs. The results of this work can address some questions regarding caustic formation. To achieve this, two aspects have to be kept in mind. First, NICER consists of co-aligned detectors, each of which is essentially a small X-ray telescope. This clever design avoids (for most sources) two of the difficulties commonly faced by X-ray observatories – pile-up of photons and detector deadtime. Correspondingly, this design requires the calibration of detectors in terms of their long time light curves (LTLCs) and their spectral properties. This has been done in this work for the useful detectors of NICER.
Second, to obtain FLC and PRS at high phase resolution, one needs highly accurate rotation frequency and its time derivative as a function of epoch, since these parameters of the Crab pulsar change significantly with time and since the NICER observations of the Crab pulsar occurred over a duration of about years. The and have been obtained self consistently from the NICER data itself and only that data has been used for which the error in the derived rotational phase of each photon is less than of a period. This enables one to obtain the FLC and PRS of the Crab pulsar at a resolution of bins per period, and certainly better than bins per period. The details of how these and are obtained, the treatment of the Crab pulsar glitch of November, and the consistency with the radio ephemeris are explained in Vivekanand (2020). Typically the accuracy of obtained by NICER is Hz, with a standard deviation of Hz. The typical accuracy of the is Hz/s, with a standard deviation of Hz/s.
Section discusses the observations and analysis of this work. The next three sections describe the calibration of the useful detectors of NICER. Sections and presents the spectrum for the Crab pulsar. The last section discusses the implications of this work.
2 Observations and analysis
NICER consists of co aligned detectors (Arzoumanian et al., 2014; Gendreau et al., 2016; Prigozhin et al., 2016). Its operating range is keV with a peak collecting area of cm2 at keV and below. Time resolution is microsecond (s). At the time of doing this work, NICER had observed the Crab pulsar on different days, starting from Aug to Apr , which is a duration of years, with multiple observations on of those days, resulting in observation identity numbers (ObsID). Ten of these ObsIDs had live times of less than sec, so they were not analyzed. Four of them were ignored for reasons specified in Vivekanand (2020), which gives details of the earlier observations spanning years and their analysis. The analysis of this work is slightly different because of the enhanced sensitivity requirement for spectral work.
The data were analyzed using NICER version --_Va software included in the HEAsoft distribution 6.27.2; the calibration setup was CALDB version XTI(). The analysis for each ObsID begins with the pipeline tool nicerl2 with the following parameters: angle between pointing and earth limb ELV , and angle between pointing and bright earth BR_EARTH (Stevens et al., 2019; Bogdanov et al., 2019; Guillot et al., 2019; Miller et al., 2019; Trakhtenbrot et al., 2019); magnetic cut off rigidity COR_RANGE (Bogdanov et al., 2019; Guillot et al., 2019; Malacaria et al., 2019; Riley et al., 2019; Trakhtenbrot et al., 2019; van den Eijnden et al., 2020); and undershoot count rate UNDERONLY_RANGE -; the rest of the parameters have default values (Stevens et al., 2019; Bogdanov et al., 2019). Next, the tool nimaketime is used to create good time intervals (GTI), using additionally the following two criterion: angle between pointing and sun SUN_ANGLE (Bogdanov et al., 2019); and observations must be done when NICER in not in sun light, SUNSHINE (Hare et al., 2020).
Next, the tool fselect is used to exclude data of detectors , and , whose data is known to be problematic (Bogdanov et al., 2019; Ray et al., 2019). Coupled with the detectors , , and that are permanently switched off at NICER, this leaves out of the original detectors for our analysis. Then, the original GTIs of the event file are replaced by the GTIs obtained above (if required, the FITS file extension name EXTNAME has to be changed back to GTI_FILT). Then fselect is used to filter out photon events outside the GTIs, using the gtifilter option. Next the LTLC is obtained using the tool extractor with a bin size of sec. This is used to exclude durations of observations in which the mean count rate is unusually low or high; this is done by editing the GTI extension of the event file and filtering using fselect with the gtifilter option.
Then, fselect is used to extract the data of each individual detector and extractor is used to obtain its LTLC. The tool fstatistic is used on the LTLC to obtain basic statistics of the count rate of each detector – the mean value, its standard deviation, the minimum and maximum values. Unusually low or high values indicate flaring, satellite not exactly on source, etc.; these durations are also excluded.
High background counts are identified by extracting a LTLC of bin size sec in the energy range keV and excluding those durations in which the count rate is statistically higher than (Bult et al., 2018). Details are given in Appendix A. NICER’s background is believed to be typically less than count/s/keV. It is obtained by processing data from several RXTE background regions. Background region of RXTE has an approximately power-law spectrum that is counts/s/keV at keV and counts/s/keV above keV (Keek et al., 2018). In the top panel of their Figure , the background decreases to counts/s/keV at keV, while the flux of the Crab nebula plus pulsar is counts/s/keV at that energy, which can be derived from Figure 4. Thus the background is times weaker than the Crab nebula plus pulsar at keV.
High particle background due to geomagnetic storms are accounted for by the space weather parameter Kp (Ludlam et al., 2019; Miller et al., 2019), which is required to be below the value . This is done by first converting the START and STOP times in the event files from the TT timescale to UTC dates and times and then checking the Kp values during the observation in the corresponding yearly WDC files111ftp://ftp.gfz-potsdam.de/pub/home/obs/kp-ap/wdc/yearly/. Details are given in Appendix B.
Finally, the event epochs that remain after the above stringent filtering are referenced to the solar system barycenter using the barycorr tool, using the JPL ephemeris DE430, with the position of the Crab pulsar at that epoch as input. The and , and their reference epoch for each ObsID are then used to compute the rotation phase of each photon, which is written into the event file. Vivekanand (2020) describes most of the above analysis in a different context. Later sections of this work describe the specific analysis required for the corresponding sections.
The filtering above reduced the total live time by %, to ksec, leaving only ObsIDs with sufficient data to analyze, that also had their and estimated by Vivekanand (2020), who does not implement this stringent filtering, who thus had many more photons for obtaining and . For those groups of ObsIDs that had sufficient number of photons in spite of the stringent filtering, it was possible to estimate and , which were consistent with those derived by Vivekanand (2020).
3 Long time light curve (LTLC)

Figure 1 shows the LTLC of the Crab nebula plus pulsar using the useful detectors of NICER, in the energy range keV, for the years of observations used in this work, with a bin size of sec. This was obtained using the tool extractor. The mean count rate is per second with a standard deviation of , which is % of the mean. The maximum and minimum values in Figure 1 are and counts per second, which implies that the peak-to-peak variation of the LTLC is about %. This is consistent with the recent measurement of the Crab nebula plus pulsar’s LTLC by the NuSTAR and Swift/BAT missions222(https://iachec.org/wp-content/presentations/2019/sessionI_-Madsen.pdf). This is also consistent with the findings in the recent past, that the reported decrease in the Crab nebula’s X-ray flux by % over years starting from MJD (mid ), as reported by Wilson-Hodge et al. (2011), is no longer observed.333https://ntrs.nasa.gov/api/citations/20120015012/downloads/-20120015012.pdf444http://www.iucaa.in/iachec/talkmaterials//66/IACHEC-02-29-2016%20-%20Case.pptx In fact Wilson-Hodge et al. (2011) themselves stated that they cannot predict if the flux decline will continue in the future. This result is also confirmed in Fig. of Kouzu et al. (2013).

Figure 2 shows the statistics of the individual LTLCs. The dots with error bars show the mean count rate for each detector over the year duration. The crosses and the pluses represent the maximum and minimum values, respectively. All except detector show statistically similar values. Detector has a significantly lower mean count rate and a standard deviation slightly higher than the others. For example, the mean count rates of detectors and are and , respectively, while their standard deviations are and . The minimum values in Figure 2 are typically standard deviations below the mean, the error in the last digit given in the parenthesis; the maximum values are typically standard deviations above the mean. Now, a Gaussian probability distribution function has of its area beyond the value standard deviations of the variable; this is obtained using the error function. This implies that half of that area, or , lies above and below standard deviations, respectively. This is consistent with the fact that for our sample size of bins for each detector, each of s duration, one can expect one sample beyond standard deviations. Note that the live time for each detector in Figure 2 is ksec and not the actual ksec because the extractor tool ignores bins of small fractional live time.

Figure 3 compares the LTLCs of the individual detectors with that of all detectors combined (shown in Figure 1), after normalizing each LTLC with its mean count rate. The per degree of freedom is below for detectors, between and for detectors and between and for detectors. The is derived using the formula , where and are the counts (not count rate) in the corresponding time bins of the two LTLCs being compared. Thus, only Poisson statistical fluctuations are being accounted for in Figure 3. In such a complicated system such as NICER, it is reasonable to expect other kinds of fluctuations as well, not to mention minute source fluctuations also. Therefore, it is concluded that the LTLCs of all detectors are broadly similar.
One is justified in normalizing each LTLC with its mean count rate, because the variations of the latter in Figure 2 represent not merely statistical fluctuations, but something more like, say, differences in effective area. The error bar on the mean counts in that figure is the standard deviation, and not the error on the mean; this was done to better compare the mean value with the maximum and minimum values. For 49 detectors there are distinct pairs, of which only , and pairs have count rates differing by less than , and , respectively. So the mean count rate of each detector is statistically distinct from that of another detector, and most probably represents the difference in their effective areas.
4 Raw spectrum

Figure 4 shows the combined raw spectrum (uncalibrated) of the detectors, consisting of ksec of data from ObsIDs, from energy keV. The sharp dip in spectrum at around keV is due to the Gold (Au) edge555https://heasarc.gsfc.nasa.gov/docs/heasarc/caldb/nicer/docs/xti/-NICER-Cal-Summit-ARF-2019.pdf; the Gold is coated on the reflecting surface of the X-ray concentrators (XRC).
Figure 5 shows the comparison between Figure 4 and the corresponding spectrum of each detector, in terms of the per degree of freedom obtained over channels in the energy range keV, obtained using the same formula as in Figure 3. The lower energy range was ignored because here the was very high, mostly due to the Carbon, Nitrogen and Oxygen edges at keV, and also due to the fact that our analysis is done with data beyond keV. of the values are below ; the extreme value of belongs to detector . Once again, one expects non-Poisson fluctuations to exist in the data. The spread in is much larger than their formal statistical errors. However most of the gets contribution from the keV Gold edge. Therefore, one does not expect better agreement than this. It is therefore concluded that the raw spectra of the detectors are statistically similar.
Figure 5 is not merely Figure 2 plotted in a different way; each is sensitive to different physical parameters. The latter is sensitive to time variations of effective area, deadtime, etc., while the former is sensitive to optical loading of the detectors, calibration of the gain of the receivers that assigns an energy channel to each photon event, etc.

Figure 6 explores whether the spectrum of each detector changes as a function of time. It displays the between data earlier to and later than the date Nov , which roughly divides the data into two halves. The is estimated using the same formula as in Figure 3, after scaling the two spectra with their respective live times, because the cut-off date does not divide the data into exactly two equal halves. Just as in the previous figure, the values in Figure 6 are reasonable. It is therefore concluded that the raw spectrum of each detector does not change as a function of time during the year of observations.

In both Figure 5 and Figure 6, most of the estimated are larger than their formal errors. An extreme position to take would be to conclude that no detector behaves like any other. However, the acceptance or rejection of a hypothesis based on depends upon the confidence level, which can be subjective in some contexts. In complicated systems such as NICER one expects large due to unknown or immeasurable factors. In principle, one can chose for further analysis only those detectors whose is less than, say, 2.0, and live with the corresponding reduced sensitivity. Here statistics can not help one – only experience, intuition and the context will. To cite an example, in the good old days radio astronomers considered the detection of a point source as positive if it was detected at a signal to noise ratio of . One can ask why , and not or ? The answer is that this number was arrived at through common experience and not through pure statistics.
5 Deadtime

Wilson-Hodge et al. (2018) describe the procedure for estimating the dead time for NICER. There are two sources of deadtime. First, after reception of an event, the detector is unable to process further events for some time, during which it processes the previous event. This duration is recorded in the DEADTIME column of the event files. Second, if the source is bright, or the background is flaring, data buffers may saturate in the Measurement/Power Units (MPUs), which may stall recording of further events until the MPUs are reset. This causes loss of GTI, or equivalently, deadtime on the source. In this work the former will be called detector deadtime while the latter will be called GTI deadtime. The detector deadtime is contributed by all events, and not just the X-ray events. In Vivekanand (2020) only the detector deadtime was taken into account and that too only for X-ray events.
The procedure of Wilson-Hodge et al. (2018) was repeated almost exactly for four ObsIDs – and , having the shortest ( s) and longest ( s) live times respectively, and and having intermediate live times ( and s respectively). While Wilson-Hodge et al. (2018) used phase bins per period, and phase bins for estimating GTI deadtime, the corresponding numbers here are and . The results are similar for all four ObsIds, so the detailed results for ObsID alone will be presented here.
The top panel of Figure 7 shows the mean X-ray counts per detector as a function of phase for ObsID (i.e., the FLC). This has been obtained using cleaned events (Wilson-Hodge et al., 2018). The middle panel shows the mean GTI per phase bin after subtracting the expected mean value of s, which is obtained by dividing the live time by the number of phase bins. This has been obtained from the GTIs of the individual MPUs. The last panel shows the mean deadtime per detector, obtained using all events (Wilson-Hodge et al., 2018). In each panel of Figure 7, the results are first obtained per MPU and then averaged.
Two points are noteworthy in Figure 7. First, in the middle panel, the difference in GTI per phase bin, between the observed and the expected values, has a mean value of ms, and an rms of ms; the peak to peak variation is ms. The mean value of GTI differs from the expected value by %, while the peak to peak variation corresponds to % variation. This implies that the GTI per phase bin is almost constant across the FLC and that its observed value is very close to the expected value; and so there is no significant loss of GTI due to MPU buffer overflows. This is further supported by the fact that, had there been GTI losses, it would have been anti-correlated with the FLC in the top panel which appears not to be the case.
Second, the detector deadtime fraction in the last panel of Figure 7 in the off-pulse region (phase ) is %, while at the pulse peak it is %. The corresponding numbers in Figure 1 of Vivekanand (2020) are % and %. Thus the detector deadtime fraction obtained using all events is only % larger than that obtained using only X-ray events. However, these numbers are approximate. The correct method of estimating the deadtime fraction or count rate is to first estimate them per MPU, and then average (Wilson-Hodge et al., 2018), since the GTI per MPU as well as the number of detectors per MPU could differ across the MPUs.

This is done in Figure 8. The mean off pulse deadtime fraction is %, while that at the pulse peak is %; these numbers are very similar to the approximate values above.
The results of Figures and hold for data of the other three ObsIDs also, except for lower statistical significance on account of lower live times.
Therefore, if the GTI deadtime is non existent for the Crab pulsar, the difference between detector deadtime obtained using all events and that obtained using only X-ray events, must depend upon the difference in the number of these two event types. This is demonstrated in Table 1, which contains event statistics from the filter file of that ObsID; for example the filter file for ObsID would be “ni.mkf” found in the directory AUXIL. The filter file contains the numbers of various kinds of events registered by NICER, logged once every second in time. In particular, it contains two columns labeled TOT_ALL_CNTS and TOT_XRAY_CNTS. The former contains the number of all types of events, while the latter contains the number of what are deemed to be X-ray events, but are not guaranteed to be so666https://heasarc.gsfc.nasa.gov/docs/nicer/mission_guide/. The second and third columns of Table 1 contain the sum of TOT_ALL_CNTS and TOT_XRAY_CNTS, respectively, for the duration within the GTI of the corresponding event file, for useful detectors. For example, the number of TOT_ALL_CNTS and TOT_XRAY_CNTS for ObsID registered within the GTI are actually and , respectively, for detectors; after deleting the contribution of detectors , and , found in the columns MPU_ALL_COUNT and MPU_XRAY_COUNT in the filter file, the numbers become and , respectively.
The fourth column of Table 1 gives the ratio of the number of events of column that were eventually classified as X-ray events, obtained in the keyword NAXIS2 in the corresponding event file, and TOT_ALL_CNTS. Table 1 has been made for all ObsIDs used in this work, and the mean value of the above ratio is . This demonstrates that the difference between actual X-ray counts and all counts for the Crab pulsar data of NICER is typically about %, which is a small number.
There are two conclusions so far in this section. First, The difference between the number of all events and the number of X-ray events for the NICER data of the Crab pulsar is quite small (%). This is not surprising, since the event rate for the Crab pulsar is dominated by events from the source; for much less luminous sources, the event rate would be dominated by particle events, etc. Second, the GTI deadtime is negligible for the Crab data of NICER. This is also not surprising, since source count rates of about per second (for 49 detectors) begin to show such effects777https://heasarc.gsfc.nasa.gov/docs/nicer/data_analysis/-nicer_analysis_tips.html#Deadtime, and the Crab pulsar’s peak count rate is only about counts per second. Further, MPU buffer overflow depends upon the product of the count rate and the duration for which it is maintained;
ObsID | TOT_ALL_CNT | TOT_XRAY_CNT | NAXIS2 / TOT_ALL_CNT |
---|---|---|---|

for the Crab pulsar the peak count rate is maintained only for a few ms, so the probability of buffer overflow is small. Furthermore, the stringent filtering of this work might have ensured that high particle durations are excluded, which reduces the probability of buffer overflow in the remaining data.
Figure 9 compares the detector deadtime fraction of each of the detectors with the combined detector deadtime fraction of all detectors, across phase bins in a period. It estimates the differences of the two curves and computes their mean and standard deviation. Ideally, the mean should be zero for each detector and the standard deviation should reflect the average measurement error of the detector deadtime fraction across a period. Figure 9 shows the ratio of mean and standard deviation for each detector. The mean value of this ratio in Figure 9 is . If one ignores the extreme value of of detector , the results are . Thus the mean value of this ratio is consistent with being zero.
In Figure 9, the relatively large values of standard deviations (not standard deviation of the ratio mean/rms) for each detector are due to two factors – the reduced number of photons in each phase bin for a single detector and, to a lesser extent, the intrinsic distribution of detector deadtimes in the column DEADTIME in the event files. It should be recalled that the quantity being estimated here (detector deadtime fraction) is very small, of the order of % to %; the difference of two such quantities is typically of the order of % to %. Now, the mean number of events in a phase bin for a single detector is ; the Poisson fluctuation in this quantity is of the order of %; over phase bins the accuracy of the estimated mean (due to the Poisson process alone) would be %, which is comparable to the quantity being estimated. Similarly, the mean detector deadtime for ObsID is s (Vivekanand, 2020). The fractional error is %. The mean detector deadtime estimated using events will have an accuracy of %, which is also comparable to the quantity being estimated.

The time evolution of detector deadtime is studied by estimating the deadtimes of the first and second halves of the data, for all detectors combined, with the cutoff date of Nov that was used in Figure 6. The quantity plotted in Figure 10 is as a function of phase, where and are the detector deadtime fractions in the first and second halves of the data, respectively. The mean value of the fractional difference is ; i.e., the earlier and later detector deadtime fractions differ by about %. It is therefore concluded that there is no evolution of detector deadtimes as a function of epoch, during the years of observations studied here.

Finally, Figure 11 investigates the dependence of detector deadtime upon photon energy. The combined data of all detectors was divided roughly into two equal parts – one consisting of photons with energy between keV, and the other between keV. The FLC and deadtime fraction for each energy band is shown in the top and bottom panels of Figure 11, respectively. The spectral evolution of the FLC with energy is evident in the top panel of Figure 11. The deadtime fraction curves mirror this evolution in the bottom panel, so it is not possible to directly compare the two curves. However, if the detector deadtime in a phase bin depends only upon the photon count rate in that bin and not upon the photon’s energy, then the deadtime fraction would have the same linear dependence upon the count rate for the two energy bands. So a linear fit was done to the deadtime fraction against the count rate in each energy band (see Vivekanand (2020) for justification of linear dependence), and the results are given in Table 2.
Energy Band | ( | () | () |
---|---|---|---|
keV | |||
keV |
The two slopes are almost the same, while the intercepts are negligible. This proves that the detector deadtime fraction depends only upon the count rate and not upon the photon energy.
6 Calibrated phase averaged spectrum (PAS)

The top panel of Figure 12 shows the calibrated phase averaged spectrum (PAS) of the Crab nebula plus pulsar using all useful detectors, for the ObsIDs with a live time of ksec. The spectrum was obtained using the extractor tool. It was analyzed using XSPEC888https://heasarc.gsfc.nasa.gov/docs/xanadu/xspec/manual/manual.html version , using nixti20170601_combined_v002.rmf as the main response file and nixtionaxis20170601_combined_v004.arf as the ancillary response file. These differ from the corresponding files found in CALDB version XTI(), viz. nixtiref20170601v002.rmf and nixtiaveonaxis20170601v004.arf, in that the latter two are relevant for observations using all detectors of NICER, while the former two are relevant for observations using only detectors; see the relevant analysis thread999https://heasarc.gsfc.nasa.gov/docs/nicer/analysis_threads/arf-rmf/ at the NICER site. Channels to were used (energy range keV). No background spectrum was used since that becomes important for the Crab pulsar only at much higher energies (Madsen et al., 2015), as mentioned in section . Ludlam et al. (2018) state that the background fields have count rates of counts/s, while the Crab pulsar’s average count rate is counts/s, for detectors. The default photo ionization cross-sections and solar abundances were used (vern and angr). An absorbed power law model was fit to the data of Figure 12; the parameters of the model are the column density of absorbing Hydrogen , the power law index , and the power law normalization . The results are: cm-2, ; and ; the per degree of freedom is , for degrees of freedom. The errors are obtained using the error function and represent % confidence levels; at higher decimal places the lower and upper limits of the errors are asymmetric.
These results are consistent with the results of XMM-Newton in the keV band for the overall Crab region (Kirsch et al., 2006), in their Table and Figure . Their values are cm-2 and , with per degree of freedom.
These results also compare well with the results of NuSTAR (Madsen et al., 2015) in their Figure , in the energy range keV. They fixed the value of at , since their data is not sensitive to this parameter, and use the wilms solar abundances. Their , and they do not mention the . Their is in the same numerical range as our result considering the fact that their energy range is much larger.
The bottom panel of Figure 12 shows the ratio of the data to the absorbed power law model curve. As found in Figure 1 of Madsen et al. (2015), the variations are of the order of %, presumably indicating the accuracy of the spectral calibration of these instruments.
As mentioned by Madsen et al. (2015), the non piled up instruments covering the keV band agree on a power law index of for the PAS of the Crab nebula plus pulsar, without any break or curvature in this band; see also Kirsch et al. (2005). Kouzu et al. (2013) also confirm this result using the HXD detector aboard Suzaku. Our result is consistent with this statement. Moreover, the more important result is the variation of across the rotation phase, and not its absolute value, since that is correlated with (see Figure of Massaro et al. 2000; see also XSPEC manual).
It is therefore concluded that the PAS of the Crab pulsar and nebula in Figure 12 is consistent with earlier studies.

Figure 13 is similar to Figure 12, except that lower energy limit is keV. The ratio of the data to the model in its lower panel has variations of the order of %, the same as in the latter figure. The fit parameter values are: cm-2, ; and . These are consistent with the values obtained above for Figure 12, but the errors are unreliably smaller, because the per degree of freedom is , contributed mainly by the channels between energies keV. This appears to be due to the very high photon counts in the lower energy channels. This problem disappears when the PRS is computed in the next section, since the number of photons in each energy channel is now less by the number of phases in the period.
7 Calibrated phase resolved spectrum (PRS)
The PRS of the Crab pulsar has been studied over the last two and half decades by several workers at both the soft and the hard X-ray energies, using different X-ray observatories (RXTE, BeppoSAX, XMM-Newton, Chandra, NuSTAR and Insight-HXMT) (Pravdo et al., 1997; Massaro et al., 2000, 2006; Kirsch et al., 2006; Weisskopf et al., 2011; Ge et al., 2012; Madsen et al., 2015; Tuo et al., 2019). The highest phase resolution achieved so far has been typically in phase; even though BeppoSAX (Massaro et al., 2000, 2006) and RXTE (Ge et al., 2012) start with and phase bins for the FLC, respectively, they have had to estimate the PRS over phase bins to maintain statistical significance. The following sub section presents the PRS of the Crab pulsar obtained by NICER over phase bins. The next sub section obtains the PRS over bins, although the number of independent phase bins is probably or better.
The ObsIds used in this work already have their and (each at its reference epoch) estimated by Vivekanand (2020), along with their formal errors. These were verified in those cases where the event files had sufficient number of photons in spite of the stringent filtering of this work. For each ObsID, using its start and stop times available in the corresponding event file, a phase error was calculated, that would result if the and used were different by twice their formal errors. Only those ObsIDs were retained that had the phase error less than . This eliminated the ObsIDs and , leaving ObsIDs for further analysis. Next, FLCs were formed for each of the ObsID in phase bins. These were then cross correlated with the FLC of ObsID , after shifting it in phase so that the first peak of its FLC lies at phase . The phase offsets thus obtained had a typical error of or better. These phase offsets were then used along with the corresponding and to compute the phase of each photon event in the ObsIDs (see Vivekanand (2020) for details).
7.1 Low phase resolution PRS
Figure 14 shows the calibrated PRS of the Crab pulsar using all useful detectors ( ObsIDs, live time ksec), over the energy range keV. The spectra were obtained with phase bins per cycle, using the extractor tool, and were analyzed using XSPEC. The background spectrum was extracted from the phase range to . The response and ancillary response files used are those mentioned earlier. Spectral channels below and above were ignored. The default photo ionization cross-sections and solar abundances were used. Details are given in Appendix C.
It is known that, while the PAS of the Crab pulsar fits well to a single power law model over the energy range keV, the PRS requires either a break in power law at around keV (Madsen et al., 2015), or a curved spectrum (Massaro et al., 2000, 2006). The NICER energy range justifies the use of a single power law. So in Figure 14 a single absorbed power law was fit to each of the phase resolved spectra, The phase ranges and do not have sufficient number of photons for a reasonable fit, after background subtraction.

For the fit, the spectra at all phases must have the same absorbing column density . As mentioned earlier, the power law index is correlated with ; and the absolute value of is not as important as its variation with rotation phase. Therefore was fixed at the value cm-2 in Figure 14 (Massaro et al. 2006; see also Table of Weisskopf et al. 2011, and references in Ge et al. 2012). As before, the errors in Figure 14 represent the % confidence level.
The qualitative variation of with phase in Figure 14 is consistent with the results obtained with the BeppoSAX detector MECS, in the energy range keV (Figure b of Massaro et al. 2000 and Figure of Massaro et al. 2006). It is also consistent with the results of RXTE in the energy range keV (Figure of Pravdo et al. 1997, and Figure of Ge et al. 2012). However, the RXTE results are obtained by fitting only a single power law over the much larger energy range. It is also consistent with the results of XMM-Newton in the energy range keV, although their phase resolution is relatively poor (see Figure of Kirsch et al. 2006). It is also consistent with the results of NuSTAR, who fit a broken power law in the energy range keV (bottom panel of Figure of Madsen et al. (2015)). It appears to also be consistent with the results of Insight-HXMT, although their energy range is much larger, keV, and they appear to fit a single power law in this entire energy range (Table and Figure of Tuo et al. (2019)). Chandra’s energy range was much smaller, keV, and it had relatively much fewer photons; so comparison with this work is difficult.
It is therefore concluded that the results of Figure 14 are qualitatively consistent with previous results. Next some quantitative comparisons will be made.
The PRS of NuSTAR (Madsen et al., 2015) that can be compared with this work is given in the extraction region section of their Table . The peak of their FLC appears to be at phase in the bottom panel of their Figure , which corresponds to phase in Figure 14 above. So their three bins straddling the peak, with phase boundaries , and , correspond to the phase boundaries , and , respectively in Figure 14 above. These three bins were chosen for comparison since they contain the highest number of photons in the PRS. Their background spectrum is extracted from their phase range , which corresponds to the phase range in Figure 14 above. Madsen et al. (2015) fix the value of at and use the wilm photo ionization cross-sections and vern solar abundances.
PHASE | (NuSTAR) | (NICER) | diff () |
---|---|---|---|
Doing the same with the NICER data in the corresponding phase bins, one obtains which is compared with their in Table 2, which is the first of the two spectral indices for a broken power law model that they use over the keV range, the break occurring at keV. The of Madsen et al. (2015) differs from the corresponding of this work by , and standard deviations, in the three phase bins; the corresponding reduced of the fits are , and , respectively. It is therefore concluded that there is reasonable quantitative agreement between the results of NuSTAR and that of this work. There are three aspects of NuSTAR data analysis which might explain the difference. Firstly, Madsen et al. (2015) do not specify where exactly the peak of the main pulse lies – I had to assume that it is at phase in their Figure by visual inspection. Any small difference in this value is likely to mix up the spectrum from the adjacent bins. Secondly, NuSTAR data is very severely affected by deadtime, as seen in their Figure . If Madsen et al. (2015) have used this for correcting the spectrum also, then the effect would be felt most in the bin at the peak. Lastly, NuSTAR is an imaging instrument, and the data presented in their Figure has been extracted from region between 17 and 50; a slightly different region might have yielded slightly different result.
Massaro et al. (2000) obtain the PRS of the Crab pulsar using the MECS instrument on BeppoSAX at the first peak, in the phase interval straddling the peak. They use the phase range of in their Figure to obtain the background spectrum, which translates to the phase range in Figure 14 above. They use cm-2. They obtain in their Figure (numerical value is not given). Using the same parameters we obtain , which is a reasonable agreement.
Figure 14 was also produced using the energy ranges keV and keV, to check if the choice of the start of the energy range made any difference to the results. The variation was similar, except for reduced statistical significance on account of reduced number of photons. Two other energy ranges were also tried, viz. keV and keV, but here the differences were imperceptible, as expected.
It is therefore concluded that the results of Figure 14 are quantitatively consistent with the results of NuSTAR and BeppoSAX.
The results of this and the following sub-section were obtained using both pairs of rmf and arf calibration files; the difference between the two sets of results is insignificant, except for the power law normalization coefficient , which differs by about % as expected, since that is the difference in the effective area between the two calibrations.
7.2 High phase resolution PRS

Figure 15 shows the equivalent of Figure 14 at the two peaks of the FLC of the Crab pulsar, at a phase resolution of . The analysis method is the same as in Figure 14, except that due to further reduction in photon counts per phase bin, energy bins that had less than photons were ignored in each PRS.
Ge et al. (2012) display high resolution FLC at the two peaks, but in different energy bands, but they do not display at this high resolution.
In the top left panel of Figure 15 the count rate rises from at phase to at phase , then falls to at phase , indicating that at the first peak, the FLC of the Crab pulsar rises slowly and falls faster. The intermediate count rates of and at phases and , respectively, confirm this trend.
In the top right panel of Figure 15 the count rates are , , , , and at phases , , , and , respectively, not showing the same clear trend.
8 Discussion
This section will begin with the scientific motivation for obtaining high resolution FLC and PRS of the Crab pulsar at high energies. It was mentioned in section that these are required to understand the high energy emission mechanism of RPPs. It was also mentioned that the analysis of the PRS lagged far behind that of the FLC. One reason was probably the success obtained in theoretically producing the double peaked FLCs of several RPPs based only on the geometry of the magnetic field. The other reason was the relative difficulty in applying the basic radiative processes in a realistic magnetosphere of the RPPs, viz., curvature radiation (CR), inverse Compton scattering (ICS) and synchrotron radiation (SR) (Cheng et al., 1986). The availability of high resolution PRS, and its use in conjunction with high resolution FLC, necessitates the invocation of these basic radiative processes in addition to magnetic field line geometry and magnetospheric processes. Such a problem is very complicated. In this work, the focus is restricted to the formation and properties of caustics in FLCs using the main results of this paper (Figure 15).
8.1 Two caustics or one?
The left and right sections of Figure 15 show the FLC (top panel) and PRS (bottom panel) of the Crab pulsar at its two peaks. Now, it is generally believed that the FLC of the first peak (left section) is a caustic, due to its narrow and luminous peak. A legitimate query is whether the much wider and less luminous FLC of the second peak (right section) is not a caustic, or whether it was a caustic that was smoothed by some physical process. In the latter case, it would be reasonable to assume that the pre-widened caustic at the second peak had a PRS similar to that at the first peak. Then the physical process widening the second peak’s FLC would also smooth its PRS. The challenge is to come up with a physical process that can reshape the FLC at the first peak into that at the second peak, while simultaneously transforming the PRS at the first peak into that at the second peak.
At first glance this appears to be difficult. By deconvolving the FLC of the second peak with the FLC of the first peak, it is possible to come up with a smoothing function that can transform the first FLC into the second. Naively this should also widen the PRS of the first peak, which would not look anything like the monotonically increasing function of phase in the second peak of Figure 15. So one has to invoke a functional relation between the FLC smoothing function and the corresponding PRS smoothing function, to explain the data in Figure 15. This aspect depends critically upon the specific emission mechanism, so one has to derive a functional relation each for the CR, ICS and SR mechanisms. Although this is a challenging task, it would help to identify which of the three emission mechanisms is operating in the Crab pulsar.
In the alternate case that the second peak is not a caustic, one has to explain the significant rise and fall of X-ray flux as a function of phase, coupled with the monotonic increase in as a function of phase.
In either case, Figure 15 contains important constraints for the process of caustic formation in the Crab pulsar’s X-ray FLC.
The third alternative, that second peak is indeed a caustic with an entirely different PRS, will be discussed in the next section.
8.2 Caustics with different PRS
There is probably some observational evidence that there are at least two kinds of caustics, each with a different PRS. DeCesar (2013) show the FLC and PRS of three RPPs that have strong double peaks at -ray energies, obtained from the Fermi observatory; see also Brambilla et al. (2014). In their Figure the shape of the FLC and PRS () of the Crab pulsar is roughly similar to that in Figure 14 above, except for differences in phase resolution, photon statistics, etc., and a small dip in the variation in the first peak. In their Figure the FLC of the Vela pulsar has two sharp peaks, but the variation of with phase appears to be approximately a phase reversed version of the variation in Figure 14. Specifically, decreases monotonically with phase in the first peak, while it is almost constant in the second peak, which is opposite to the variation in Figure 14 above. In their Figure the Geminga pulsar also has two sharp peaks, and the decreases monotonically with phase in the first peak, just as in the Vela pulsar, while its variation is irregular in the second peak, but is not inconsistent with being constant. Both Vela and Geminga RPPs have two sharp peaks each, presumably caustics, and one of them has a roughly constant with phase while the other has a monotonically decreasing with phase.
Unfortunately the PRS of these RPPs have not been obtained at soft X-ray energies. Moreover, the FLC of Vela and Geminga RPPs have no sharp peak at soft X-ray energies, and Vela has only one sharp peak at hard X-ray energies (Thompson, 2008). Therefore this discussion has to be done at -ray energies until high resolution FLC and PRS of the Vela and Geminga RPPs is obtained at soft X-ray energies.
If the observations discussed in this section are correct, then the Vela and Geminga RPPs may have two kinds of caustics, one with a roughly constant and the other with varying monotonically with phase. Then the second peak of the Crab pulsar in Figure 15 could very well be a caustic with a monotonically changing with phase. However its FLC is not at all sharp, which is a problem from the point of the definition of a caustic.
Clearly the PRS at the second peak of the Crab pulsar in Figure 15 is an important constraint for the formation of high energy caustics in RPPs.
8.3 General formation of caustics or cusps
First, it is not clear if the sharp peak of the FLC of the Crab pulsar is on account of one or two poles. This can be studied by theoretically estimating the FLC and the PRS at the peak, and comparing it with the observations in Figure 15. In the two pole scenario, one can expect photons from the pole farther away from the observer to traverse a region of enhanced magnetic field and particle density, before reaching the observer, as compared to photons from the closer pole, since the trajectory of the former might pass closer to the center of the RPP for reasonable values of and . This might imply enhanced optical depth, either in terms of passage through enhanced density of plasma, or in terms of scattering off enhanced density of relativistic particles and photons. If this is true, then the PRS observed from two poles would be different from that observed from one pole only; it is likely that the two pole PRS would have a curvature, or even a break, in the spectrum, instead of being a simple power law. It is also likely that such an effect, if at all it exists, may be too weak to be observed by current instruments. Further, the FLC from two poles may be more luminous than that from a single pole, but it may be broader (less sharp), since it requires alignment in phase of a much larger volume of emission. Currently the above arguments can only be tested statistically, since one does not have access to a FLC and PRS from a single pole that can be used as a reference.
Second, it is not clear if the sharp peak of the FLC of the Crab pulsar is formed due to the SMS effect. If so, then photons from the same magnetic field line, that is stretched radially, will arrive in phase independent of the length of the field line involved, at least to first order. Now, the height of the peak is proportional to the length of the field line involved (Bai & Spitkovsky, 2010), while its width may not change much since it is just one field line (or a narrow group of field lines). Thus in caustics formed by the SMS effect, the width of the peak may be relatively narrow and independent of its height. By the same argument, the variation of the PRS as a function of phase might be minimum. In contrast, a caustic formed otherwise would get contributions from a substantial volume of the magnetosphere, possibly with different PRS and different peak widths; in this case, the width of the peak may be anti correlated with its height.
Future polarization observations should show that caustics formed by the SMS effect have a higher degree of polarization, than caustics formed otherwise, where one can expect significant de-polarization due to the coming together of emission from different magnetic field lines. This has been observed in the Crab pulsar’s optical FLC, where the degree of polarization at the optical peaks is a minimum. This occurs because radiation with different polarization angles piles up at the peaks (caustics; Smith et al. (1988); Dykes & Rudak (2013); see also Figure 5 of Romani & Yadigaroglu (1995)).
8.4 Pitch angles of radiating particles
The observed width of the sharp peak of the FLC of the Crab pulsar contains interesting information. First, it could be the natural width of the caustic, in which case it contains information about the details of the caustic formation. Alternately, the caustic itself may be much narrower and the observed width may be due to, say, the pitch angles of the radiating particles in the magnetic field. In which case it contains information about the details of the radiative process. A proper estimate of the width is only possible if the FLC is obtained with sufficient resolution in rotation phase. By fitting a Gaussian to the phase range in the top left panel of Figure 15, the approximate width of the caustic turns out to be in phase. A much more accurate width estimation requires proper modeling of the caustic in terms of more diverse functions than a Gaussian. This can also be done by complete FLC modeling at the peak.
Acknowledgements.
I thank the referee for bringing to my attention the IACHEC reports, and the referee and Sergio Campana for useful discussion and suggestions.References
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Appendix A High Background counts
First one extracts from the event file a LTLC in the energy range keV (energy channels ) with a bin width of s, using the extractor tool. Next one identifies those time bins in the LTLC that have count rates greater than . Let these be TTIME. These times represent the center of the time bin if the keyword TIMEPIXR ; the bin width is given in the keyword TIMEDEL. The start time of the LTLC is given in the keyword TIMEZERO, which represents the center of the first time bin. Finally the keyword of the same name, TIMEZERO, but now in the event file, contains a clock correction that is usually s; here it will be labeled CLKCOR. Therefore the relevant time range to be excluded in the event file (in units of TT) for each TTIME is given by TIMEZERO + TTIME - CLKCOR TIMEDEL, representing the lower and upper limits of the duration to be excluded, respectively.
The above time ranges have to be excluded form the GTI in the event file, in the FITS file extension . There are several ways of doing this. But an elegant way is to use the algorithm given in the FORTRAN function gtimerge in the library gtilib.f101010/apln/heasoft-6.27.2/ftools/ftoolslib/gen/gtilib.f.
Appendix B Space weather parameter Kp
The official Kp web page is at the German Research Center for Geosciences (GFZ); the link is given in footnote of this paper. The WDC directory contains the file wdc_fmt.txt which contains the format of the data in the four ASCII files of use here, viz., kp2017.wdc, kp2018.wdc, kp2019.wdc and kp2020.wdc, one for each year of operation of NICER, from which the Kp data has to be retrieved for each ObsID.
One begins by extracting the start and end times of the observation from the event file for each ObsID, from the keywords TSTART and TSTOP. One also reads the integer and fractional parts of the reference MJD for NICER (MJDREFI and MJDREFF), and the clock correction TIMEZERO (this is labeled CLKCOR in Appendix A). Then the start and end times are converted into MJD using the formula TT(1,2) = MJDREFI + MJDREFF + ((TSTART,TSTOP) + TIMEZERO) / 86400, where TT1 and TT2 correspond to TSTART and TSTOP, respectively. These are converted into Gregorian dates using the SOFA111111/apln/heasoft-6.27.2/heacore/ast/sofa/ software iauTttai, iauTaiutc, iauJd2cal, which convert the start and end times of observations first from TT in MJD units to TAI in MJD, then from TAI to UTC, then from UTC in JD units to Gregorian calendar date, respectively; note the conversion from MJD to JD before the last step. The conversion to date has been verified using the web tool xTime121212https://heasarc.gsfc.nasa.gov/cgi-bin/Tools/xTime/xTime.pl, a date and time conversion utility.
Based on the year of observation, the corresponding WDC file is read, and the Kp is plotted as a function of time during the observation; Kp is given over hour intervals. If a Kp value is greater than , then that entire hours of observation has to be excluded.
Appendix C Linux shell scripts to obtain and analyze PRS
Obtaining and analyzing manually the spectral data of Figures 14 and 15 is difficult. So Linux shell scripts were developed to do the tasks automatically.
First, the FLC of the top panels of these figures is obtained, using a C/C++ program. The output of this is an ASCII file containing two columns, viz, the central phase and the photon counts of each bin in rotation phase; in Figures 14 that would be bins.
Next a Linux shell script (in tcsh) reads the column of central phases, computes the phase boundaries of the corresponding bins, and invokes the extractor tool to obtain the spectrum of the data within each phase bin, using ObsIDs. The output of this script are FITS files of type pha, one for each phase bin. These are the so called PRS that can be analyzed using XSPEC. Next a Linux shell script (in tcsh) writes the required XSPEC commands into an ASCII file with extension .xcm, which is invoked as “xspec - *.xcm”.
The first XSPEC command defines data groups; in Figure 14 it would be data groups, one for each pha file being analyzed. The command would be “data 1:1 y_38.pha 2:2 y_39.pha … 78:78 y_115.pha”, the file names indicating the corresponding phase bin; in Figure 14, phase bins to have been analyzed. The next two commands set the response and ancillary response files for each data group: “response 1 nixti20170601_combined_v002.rmf 2 nixti20170601_combined_v002.rmf … 78 nixti20170601_combined_v002.rmf” and “arf 1 nixtionaxis20170601_combined_v004.arf 2 nixtionaxis20170601_combined_v004.arf … 78 nixtionaxis20170601_combined_v004.arf”.
Next the background spectrum file is defined for each group, as well as the channels to ignore for each group. Next the model to fit is defined “model phabs(powerlaw)”, followed by the command “/*”. Then the initial values of the parameters to fit are defined using the “newpar” command. Since there are spectra each with parameters, there are totally parameters to fit. However the first parameter of each spectrum is fixed at the value . So the next commands are “newpar 1 0.36; newpar 4 = 1; newpar 7 = 1; … newpar 232 = 1”; The command “freeze 1” ensures that these parameters are not fit but held fixed. Each command must be on a separate line. Similarly the second and third parameters of the model ( and ) are given initial values, but they are not frozen. Then the following three commands result in the fitting process: “renorm; query yes; fit”, each on a separate line.
The “ignore” and “model” commands require the use of the star symbol “*”, which is easy to issue manually in XSPEC but tricky to do so in a shell script.
Finally the command to estimate the % confidence errors on the parameters is:“error 2 3 5 6 8 9 … 230 231 233 234” on one line. Note that the parameters 1, 4, 7, …, 229, 232 do not appear in the command, since they refer to the parameter which is not fit. To speed up the execution of this command, the command “parallel error 4” uses cores of the computer’s CPU for parallel processing.
The error command requires a lot of time to execute. The whole xcm script for phase bins requires days of continuous running on an average laptop – Acer Aspire E5-575, Intel core i-U CPU @ GHz, cores, threads, GB DDR4 Synchronous RAM @ MHz, bit Fedora core operating system. The script would require years of continuous running for phase bins.