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Present address: ]Department of Physics, Syracuse University, Syracuse, NY

Mechanics of fiber networks under a bulk strain

Sadjad Arzash [ Department of Physics & Astronomy, University of Pennsylvania, Philadelphia, PA Department of Chemical & Biomolecular Engineering, Rice University, Houston, TX 77005 Center for Theoretical Biological Physics, Rice University, Houston, TX 77030    Abhinav Sharma Leibniz-Institut für Polymerforschung Dresden, Institut Theorie der Polymere, 01069 Dresden, Germany    Fred C. MacKintosh Department of Chemical & Biomolecular Engineering, Rice University, Houston, TX 77005 Center for Theoretical Biological Physics, Rice University, Houston, TX 77030 Department of Chemistry, Rice University, Houston, TX 77005 Department of Physics & Astronomy, Rice University, Houston, TX 77005
Abstract

Biopolymer networks are common in biological systems from the cytoskeleton of individual cells to collagen in the extracellular matrix. The mechanics of these systems under applied strain can be explained in some cases by a phase transition from soft to rigid states. For collagen networks, it has been shown that this transition is critical in nature and it is predicted to exhibit diverging fluctuations near a critical strain that depends on the network’s connectivity and structure. Whereas prior work focused mostly on shear deformation that is more accessible experimentally, here we study the mechanics of such networks under an applied bulk or isotropic extension. We confirm that the bulk modulus of subisostatic fiber networks exhibits similar critical behavior as a function of bulk strain. We find different non-mean-field exponents for bulk as opposed to shear. We also confirm a similar hyperscaling relation to what previously found for shear.

Introduction —  The mechanical stability of cells and tissues is largely governed by interconnected biopolymer networks such as actin and collagen. In the linear regime, the rigidity of networks of stiff fibers such as collagen is strongly dependent on the average connectivity or coordination zz Wyart et al. (2008); Broedersz et al. (2011); Das et al. (2012). While these structures undergo a mechanical phase transition from a floppy to a rigid state at the critical or isostatic connectivity zcz_{c} Maxwell (1870), this threshold lies well above the physiological connectivity of fibrous networks in 3D Lindström et al. (2010, 2013); Jansen et al. (2018). Such subisostatic fiber networks, however, undergo a strain-controlled phase transition from floppy to rigid states when subject to a finite deformation Sheinman et al. (2012); Sharma et al. (2016a). This transition is critical and occurs at a threshold shear strain that depends on the network’s connectivity and geometry Feng et al. (2016); Sharma et al. (2016b); Licup et al. (2016). More recent work has shown that the mechanical stability of these networks can be understood in terms of emerging states of self-stress Vermeulen et al. (2017); Mao and Lubensky (2018); Rens and Lerner (2019); Damavandi et al. (2022a, b). Near the critical strain, the shear modulus exhibits a power law behavior with a non-mean-field exponent.

Here, we study the mechanics of subisostatic fiber networks under a finite isotropic extension. Using a 2D triangular lattice-based model, we calculate the nonlinear bulk modulus BB with varying bending stiffness of fibers. In the absence of bending interactions between fiber crosslinks, the bulk modulus remains zero until a critical extensional strain εc\varepsilon_{c} at which BB jumps to a finite value (Fig. 1). The onset of a finite bulk modulus coincides with a network-spanning tensional pattern of bonds, as shown in Fig. 1. Near the critical extensional strain, we obtain various critical exponents and verify collapse of our modulus data using a Widom-like scaling function with two branches for strains above and below the threshold value. Moreover, we confirm a hyperscaling relation analogous to what has been previously derived for fiber networks under a simple shear strain Shivers et al. (2019a).

Refer to caption
Figure 1: Nonlinear bulk modulus BB as a function of bulk strain for a diluted triangular network at z=3.3z=3.3. The network has a zero bulk modulus below a critical strain at which BB jumps to a finite value BcB_{c}. Three snapshots of a small section of the network corresponding to the highlighted points on the modulus curve are shown. The frame is fixed in place for all three snapshots. For a bond mm with a tension τm=(lmlm,0)/lm,0\tau_{m}=(l_{m}-l_{m,0})/l_{m,0}, we plot its thickness proportional to its relative tension τm/|τ|\tau_{m}/\langle|\tau|\rangle. The red and blue colors correspond to a positive and a negative τm\tau_{m}, respectively. The gray bonds have zero tension.

Model —  In order to study the mechanics of fiber networks under bulk extension, we begin with a triangular lattice in 2D. For every node or crosslink in a triangular structure, we have three well-defined crossing fibers. Thus, a full triangular network has a connectivity of 6. To avoid the trivial effect of a system-spanning fiber, we initially cut a random bond from each fiber Das et al. (2007); Broedersz et al. (2011). Consequently in order to mimic realistic subisostatic biopolymer networks, we reduce this connectivity to z=3.3<zc=2dz=3.3<z_{c}=2d by randomly removing bonds from the initial full lattice. We note that the crosslinks in our model are permanent and freely hinging. Network’s elastic energy include both stretching and bending terms

=μ2ij(lijlij,0)2lij,0+κ2ijk(θijkθijk,0)2lijk,0,\mathcal{H}=\frac{\mu}{2}\sum_{\langle ij\rangle}\frac{(l_{ij}-l_{ij,0})^{2}}{l_{ij,0}}+\frac{\kappa}{2}\sum_{\langle ijk\rangle}{\frac{(\theta_{ijk}-\theta_{ijk,0})^{2}}{l_{ijk,0}}}, (1)

where lij,0l_{ij,0} and lijl_{ij} are the initial (relaxed) and current bond length between nodes ii and jj, θijk,0\theta_{ijk,0} and θijk\theta_{ijk} are the initial and current angle between neighboring bonds ijij and jkjk, respectively, and lijk,0=(lij,0+ljk,0)/2l_{ijk,0}=(l_{ij,0}+l_{jk,0})/2. Here, μ\mu is the stretching modulus and κ\kappa is the bending rigidity of the fibers. The first summation is over all connected nodes and the second is over all nearest-neighbor bonds on the same fiber, i.e., collinear adjacent bonds in the initial configuration. We set μ=1\mu=1 in our simulations and vary the dimensionless bending stiffness κ~=κ/μ02\tilde{\kappa}=\kappa/\mu\ell_{0}^{2}, where 0=1\ell_{0}=1 is the average bond length in the undeformed lattice Licup et al. (2015).

Here, we study the nonlinear bulk modulus of diluted triangular networks under the following bulk deformation tensor

ΛB(ε)=[1+ε001+ε],\Lambda_{B}(\varepsilon)=\begin{bmatrix}1+\varepsilon&0\\ 0&1+\varepsilon\end{bmatrix}, (2)

where ε\varepsilon is the extensional strain. By applying a bulk strain ε\varepsilon, the network’s volume changes as V=V0(1+ε)2V=V_{0}(1+\varepsilon)^{2}. We deform the network in a step-wise manner in a periodic box and minimize the elastic energy in Eq. (1) using FIRE Bitzek et al. (2006) at each strain point to obtain the minimum energy configuration. The stress components are calculated by

σαβ=12Vijfij,αrij,β\sigma_{\alpha\beta}=\frac{1}{2V}\sum_{ij}f_{ij,\alpha}r_{ij,\beta} (3)

where VV is the volume (area) of system, fij,αf_{ij,\alpha} is the α\alpha component of the force exerted on node ii by node jj, and rij,βr_{ij,\beta} is the β\beta component of the displacement vector connecting nodes ii and jj. The summation is taken over all nodes in the network. We find the nonlinear bulk modulus BB as

B=VPV=VσV=12(1+ε)σε,B=-V\frac{\partial P}{\partial V}=V\frac{\partial\sigma_{\perp}}{\partial V}=\frac{1}{2}(1+\varepsilon)\frac{\partial\sigma_{\perp}}{\partial\varepsilon}, (4)

where the pressure of the system is P=σ=1d(iσii)P=-\sigma_{\perp}=-\frac{1}{d}(\sum_{i}\sigma_{ii}) in dd dimensions. The volume of the system is not preserved under an applied isotropic extension, i.e., V=V0(1+ε)dV=V_{0}(1+\varepsilon)^{d} where V0V_{0} is the initial volume. Here, we define the nonlinear bulk modulus in the deformed state of the network, which is different from a prior definition of this parameter Sheinman et al. (2012) that is defined in the undeformed volume. We note that we find the critical extensional strain εc\varepsilon_{c} for every individual random sample using a bisection method. Unless otherwise stated, the results are averaged over 40 random samples. The error bars are the standard deviation for all samples.

Refer to caption
Figure 2: (a) Finite-size scaling analysis corresponding to Eq. (5) for diluted triangular networks at z=3.6z=3.6 with central-force interactions. In the critical region, we obtain f=0.51±0.03f=0.51\pm 0.03. The distribution of ff is shown as an inset. (b) Similar finite-size scaling analysis of BB as in (a) but at a different connectivity z=3.3z=3.3. In the critical region, we obtain f=0.34±0.05f=0.34\pm 0.05. The distribution of ff is shown as an inset. (c) The ensemble average of the bulk modulus discontinuity BcB_{c} for over 40 random samples of diluted triangular networks at z=3.3z=3.3 and z=3.6z=3.6 plotted versus inverse system size. The blue symbols, taken from Ref. Arzash et al. (2020), show the shear modulus discontinuity KcK_{c} for the same system under a simple shear. To compare different values of zz, we normalized these BcB_{c} and KcK_{c} values with the line density of networks in the undeformed state Lin .

Results —  Similar to the behavior observed under an applied shear strain Sharma et al. (2016a); Shivers et al. (2019a), we find that subisostatic central-force networks undergo a floppy to a rigid state at a critical extensional strain εc\varepsilon_{c} that depends on the connectivity and geometry of the system. At εc\varepsilon_{c}, the nonlinear bulk modulus exhibits a discontinuity BcB_{c} in agreement with findings of Refs. Merkel et al. (2019); Lee and Merkel (2022), analogous to the behavior of the nonlinear shear modulus at the critical shear strain γc\gamma_{c} Vermeulen et al. (2017); Merkel et al. (2019); Rens (2019); Arzash et al. (2020).

As shown in Fig. 2c, the bulk modulus discontinuity at εc\varepsilon_{c} appears to be larger than the shear modulus discontinuity at γc\gamma_{c}, both with a decreasing trend as we increase the system size. In the thermodynamic limit, we observe both finite BcB_{c} and KcK_{c}. The jump in nonlinear bulk modulus at εc\varepsilon_{c} is reminiscent of the behavior of linear bulk modulus of particulate systems at jamming Goodrich et al. (2012, 2014) and generic Penrose tilings Stenull and Lubensky (2014). However, for the present strain-controlled transition, this discontinuity is not a reflection of a first-order transition. Rather, since strain is a control variable analogous to temperature, this discontinuity is more analogous to a discontinuity of the heat capacity in a thermal transition at a critical point Shivers et al. (2019a).

Near εc\varepsilon_{c}, we expect the following finite-size scaling relation to capture the behavior of BB in subisostatic central-force networks Arzash et al. (2020)

BBc=Wf/ν(ΔεW1/ν),B-B_{c}=W^{-f/\nu}\mathcal{F}(\Delta\varepsilon W^{1/\nu}), (5)

where Δε=εεc\Delta\varepsilon=\varepsilon-\varepsilon_{c}, ff is the bulk modulus scaling exponent in the regime ε>εc\varepsilon>\varepsilon_{c}, ν\nu is the correlation length exponent, and (x)\mathcal{F}(x) is a scaling function that is expected to increase as xfx^{f} for large arguments, in order to obtain a well-defined thermodynamic limit. Although we use the same notation for the scaling exponents as for networks under shear, we note that the corresponding exponents may have different values. Figure 2b shows the finite-size scaling behavior of BB in diluted triangular networks. In the critical region, we obtain f=0.34±0.05f=0.34\pm 0.05 that is significantly smaller than the corresponding exponent f=0.79±0.07f=0.79\pm 0.07 for the shear modulus. By increasing the connectivity of the network to z=3.6z=3.6, we find that ff increases to 0.51±0.030.51\pm 0.03 (Fig. 2a). We note that the dependence of critical exponents on zz for this transition has also been observed under a shear deformation Sharma et al. (2016a); Arzash et al. (2021). By plotting the bulk modulus discontinuity at εc\varepsilon_{c}, we also find a decrease in BcB_{c} with increasing system size (Fig. 2c)), although with an apparent finite value in the thermodynamic limit.

By introducing bending interactions, the subisostatic networks become stabilized in the small strain regime ε<εc\varepsilon<\varepsilon_{c} with a bulk modulus proportional to the bending stiffness BκB\sim\kappa. This also has the effect of moving the system away from the critical singularity and suppressing the discontinuity in BB. The nonlinear bulk modulus follows a Widom-like scaling relation given by

B|εεc|f𝒢±(κ/|εεc|ϕ)B\approx\left|\varepsilon-\varepsilon_{c}\right|^{f}\mathcal{G}_{\pm}\left({\kappa}/{\left|\varepsilon-\varepsilon_{c}\right|^{\phi}}\right) (6)

for κ>0\kappa>0, in which the branches of the scaling function 𝒢±\mathcal{G}_{\pm} account for the bulk strain regimes above and below εc\varepsilon_{c}. Above the critical strain, 𝒢+(x)\mathcal{G}_{+}(x) is approximately constant for x1x\ll 1, while below the critical strain, we expect 𝒢(x)x\mathcal{G}_{-}(x)\sim x for x1x\ll 1, so that Bκ|εεc|fϕB\sim\kappa|\varepsilon-\varepsilon_{c}|^{f-\phi}. Near εc\varepsilon_{c}, however, continuity of BB requires 𝒢±(x)xf/ϕ\mathcal{G}_{\pm}(x)\sim x^{f/\phi} for x1x\gg 1. Figure 3a shows BB versus ε\varepsilon for triangular networks at z=3.3z=3.3 with varying bending stiffness. In the subcritical region, we find ϕ=2.32±0.06\phi=2.32\pm 0.06. The data collapse of BB corresponding to Eq. (6) is shown in Fig. 3b. For networks with z=3.6z=3.6, we obtain a Widom-like collapse of the modulus (not shown) similar to Fig. 6b using ϕ=2.33±0.1\phi=2.33\pm 0.1.

Refer to caption
Figure 3: (a) The nonlinear bulk modulus versus extensional strain for diluted triangular networks at z=3.3z=3.3 and system size W=100W=100 with varying bending rigidity κ\kappa indicated in the legend. The data are averaged over 20 random samples. The inset shows the scaling behavior of BB in the subcritical region. Using the average value of the exponent ff obtained in Fig. 2b, we find the exponent ϕ\phi for individual samples by fitting a power law to the modulus data at κ=105\kappa=10^{-5}. (b) The Widom-like scaling collapse of the modulus data in (a) using the average values of the exponents ff and ϕ\phi. The distribution of the exponent ϕ\phi calculated from fitting a power law to the modulus data at κ=105\kappa=10^{-5} is shown as an inset.

The scaling theory in Ref. Shivers et al. (2019a) can be generalized to athermal networks under an applied bulk strain ε\varepsilon. By following a similar renormalization procedure with t=εεct=\varepsilon-\varepsilon_{c} and B2t2h(t,κ)B\sim\frac{\partial^{2}}{\partial t^{2}}h(t,\kappa), we derive the scaling relations in Ref. Shivers et al. (2019a) with ff and ϕ\phi corresponding to the scaling exponents under an applied bulk strain. In order to test the hyperscaling relation f=dν2f=d\nu-2, we measure the nonaffine fluctuations δΓ\delta\Gamma under extensional strains as

δΓ=1Nlc2δε2iδ𝐮iNA2\delta\Gamma=\frac{1}{Nl_{c}^{2}\delta\varepsilon^{2}}\sum_{i}{\lVert\delta\mathbf{u}_{i}^{\mathrm{NA}}\rVert^{2}} (7)

in which NN is the number of nodes, lcl_{c} is the average bond length, and δ𝐮iNA=δ𝐮iδ𝐮iA\delta\mathbf{u}_{i}^{\mathrm{NA}}=\delta\mathbf{u}_{i}-\delta\mathbf{u}_{i}^{\mathrm{A}} is the nonaffine component of the displacement of node ii due to the incremental strain δε\delta\varepsilon. Figure 4 shows the finite-size scaling collapse of δΓ\delta\Gamma using the obtained exponents ff and ϕ\phi. The correlation length exponent ν\nu here assumes the hyperscaling relation ν=(f+2)/21.17\nu=(f+2)/2\simeq 1.17. The data collapse confirms that our scaling theory works under an applied volumetric strain.

Refer to caption
Figure 4: The finite-size scaling collapse of the nonaffine fluctuations δΓ\delta\Gamma under an applied bulk strain for diluted central-force triangular networks at z=3.3z=3.3. The correlation length exponent ν\nu is obtained from the relation f=dν2f=d\nu-2.

Discussion —  In this work, we study the behavior of nonlinear bulk modulus BB of subisostatic fiber networks using a diluted triangular model. Similar to previous studies of fiber networks under shear Sharma et al. (2016a); Shivers et al. (2019a), we observe that subisostatic networks with central force interactions undergo a critical transition from a floppy to a rigid state as we increase the isotropic extensional strain. By approaching the critical extensional strain from above, we find a power law scaling behavior of BB with a non-mean-field exponent that is much smaller than the observed shear modulus exponent for the same model Arzash et al. (2020). By introducing finite bending rigidity κ\kappa, these networks become stable in the linear regime with BκB\sim\kappa. The stabilizing effect of κ\kappa is evident in a collapse of our modulus data using a Widom-like function with two branches (Fig. 3). By studying the nonaffine strain fluctuations, we confirm that the recent scaling theory that was derived for fiber networks under shear also holds for a bulk deformation, although with different exponents. Our results are in agreement with the observed floppy-to-rigid transition in prior work on bulk modulus of fiber networks Sheinman et al. (2012). Here, however, we focus on the critical aspects of this transition. Furthermore, based on prior studies on various fiber models in 2D and 3D Licup et al. (2016); Rens et al. (2016); Shivers et al. (2019b); Arzash et al. (2019, 2021), we expect to observe an analogous behavior in a different 2D or 3D system under a bulk strain.

Acknowledgments

This work was supported in part by the National Science Foundation Division of Materials Research (Grant DMR-1826623) and the National Science Foundation Center for Theoretical Biological Physics (Grant PHY-2019745).

References