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2023

[1]\fnmAsmae \surHardoul

[1]\orgdivIbn Tofail University, Faculty of Sciences, Équipe d’Ingénierie MAthématique (E.I.MA.), \orgname PDE, Algebra and Spectral Geometry Laboratory, \orgaddress\cityKenitra, \postcodeBP 133, \countryMorocco

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[email protected]    \fnmZoubida \surMghazli [email protected] *

A Complete Mathematical Model For Trichoderma Fungi Kinetics

[email protected]    \fnmZoubida \surMghazli [email protected] *
Abstract

We develop an unstructured mathematical model describing the growth kinetics of the Trichoderma fungus and the production of enzymes (cellulase) by degradation of a substrate (cellulose) in the rhizosphere. We integrate into this model the hydrolysis step of the organic matter and analyze the asymptotic behaviour of the obtained system. We show that our system evolves towards a global attractor consisting of infinite non-hyperbolic equilibria.

keywords:
Modeling, Ordinary Differential Equations, Kinetic models, Trichoderma, Hydrolysis, Global attractor.

1 Introduction

Trichoderma is fungi that grow in almost all soils and are constituents of the rhizosphere fungal communities. They are also present on the root surfaces of many plants Harman 1998 . They play an important role in the nutrient cycle of soils. Indeed, they have a beneficial effect on plant growth and the fertility of the soils, 2007 , 2016 . Fungi of the genus Trichoderma have been used as biological control agents against a wide spectrum of soil-borne pathogens. Their antagonistic behaviour has been demonstrated in numerous research davet , 302015 , 42005 , 2005 , 2009 , 2014 . It has also been shown that these fungi play a key role in the production of a wide range of hydrolytic extracellular enzymes such as cellulase, which allows the degradation of cellulose Schuster . These enzymes are also involved in the suppression of plant diseases Elad 1982 and generally have an antifungal effect. They are also highly synergistic in their antifungal activity when combined with fungicides whose mode of action affects the cell membranes of pathogenic fungi Lorito 1994 .

Kinetic models for cellulase production by Trichoderma reesei have been developed in various research, Bharathiraja 2008 , lo 2010 , Rakshit 1991 , bader 1993 , Velkovska 1997 , Muthuvelayudham 2007 , where a soluble substrate has been used. For example, in the reference Rakshit 1991 , a kinetic model of cell growth and cellulase formation has been developed, without using a substrate consumption equation. Muthuvelayudham and Viruthagiri Muthuvelayudham 2007 , found that the logistic model, the Luedeking-Piret model and the integrated logistic model with Leudeking-Piret could accurately describe the cellulase production process, but they did not provide any numerical simulation. Bader et al bader 1993 , developed detailed kinetics for the production of an individual enzyme component, but cellulose data were not available although the model was provided. The most comprehensive kinetic models, including cell growth, substrate consumption, and cellulase production from cellulose, were first introduced by Velkovska et al Velkovska 1997 . Their study developed a simple model of product formation using total enzyme and variable substrate reaction models. However, the model was unable to predict biomass curves. Furthermore, the effect of the substrate on cellulose production is not considered, and the rate of hydrolysis is assumed to be equal to the rate of consumption of the substrate throughout the process, which is usually not the case. Lijuan Ma et al ma 2013 , developed a simple and complete model for the cellulase production process using cellulose, but they did not consider the product equation. Experimental data on cellulose, biomass, and cellulase were used for parameter estimation and validation of the model by comparing the simulations with the experimental results of (Velkovska et all Velkovska 1997 ).

Hydrolysis, which is a substrate preparation step by transforming the organic matter into a new liquefied substrate, is an important stage of the organic matter degradation process. To the best of our knowledge, none of the mathematical models describing the growth kinetics of biomass (Trichoderma) and the production of enzymes (cellulase) in degrading a substrate, have taken into consideration the hydrolysis step.

The objective of this paper is the development and analysis of a complete system that models the kinetics for enzyme production (cellulase with cellulose) by the fungus Trichoderma in the rhizosphere. Inspired by the model of Lijuan Ma et al. ma 2013 , we develop an unstructured mathematical model that integrates the step of hydrolysis of organic matter and takes into account the formation of a product (cellulase), which makes it a more realistic and complete model. A fraction of the dead microorganisms can constitute a new substrate. According to alpha , they are then recycled as organic matter to be hydrolyzed. We consider, in the proposed model, the mortality parameter as well as the substrate consumption maintenance parameter, and the product formation maintenance parameter. We analyze the asymptotic behaviour of the dynamics of the system obtained, and prove that we have a continuum of non-hyperbolic equilibria. An analogous analysis was performed in saleh for a problem related to an anaerobic digestion model in the landfill. We show that each trajectory of the system is bounded and converges towards one of these non-hyperbolic equilibria according to the initial conditions. Some numerical tests are presented.

The article structure is as follows. In the next section, the model and assumptions are introduced and discussed. Section 2 gives a mathematical analysis of the asymptotic behaviour and the set of equilibria. Finally, in Section 3, numerical simulations for different values of data from the literature and different initial conditions are given, confirming the theoretical study. A discussion, conclusions, and the bibliography end this article.

2 Model and hypotheses

Modeling the growth and product formation of various micro-organisms is generally a very difficult task due to the complexity of living systems. The number of factors influencing the ability of the organism to grow and produce enzymes is very large and leads to large complex systems with many parameters. In order to build a model that is accessible to mathematical analysis and numerical simulations, while taking into account the essential factors to describe the kinetics of enzyme production by the filamentous fungus Trichoderma in the rhizosphere, we will make the following assumptions. As a first assumption, we assume that the overall biomass has a single morphological form and that it is fed by a single substrate. We also assume that the extracellular medium (soil) is perfectly homogeneous. The model is based on the mass balance principle applied to variables which are the concentrations of the components of the system. We note by XX, BB, ss and PP the concentrations of the organic matter, the living biomass, the substrate and the product (enzyme) respectively.

The dynamics of the biomass BB, taking into account the biological process of mortality, are given by

dBdt=μ(s)BkdB,\frac{dB}{dt}=\mu(s)\,B-k_{d}\,B, (1)

where μ(s)\mu(s) is the growth function and kdk_{d} is the specific mortality rate.

The concentration of the substrate ss and the cell growth are obviously interdependent. As the cells grow, they use up the substrate, which is thus depleted. The rate of substrate consumption is described by the equation :

dsdt=1YB/sμ(s)B,\frac{ds}{dt}=-\frac{1}{Y_{B/s}}\mu(s)B, (2)

where YB/sY_{B/s} is the coefficient of efficiency of conversion of the substrate ss into the biomass BB. The substrate utilization kinetics, given in equation (2), can be modified to take into account the cell maintenance, which means living consumes substrate:

dsdt=1YB/sμ(s)BmsB,\frac{ds}{dt}=-\>\frac{1}{Y_{B/s}}\>\mu(s)\;B-m_{s}\>B, (3)

where msm_{s} is the coefficient of cell-specific maintenance by the substrate ss.

To model the kinetics of the formation of the product PP, we use the Luedeking-Piret model Luedeking 1959 :

dPdt=1YP/sμ(s)B+mPB,\displaystyle\frac{dP}{dt}=\frac{1}{Y_{P/s}}\>\mu(s)\;B+m_{P}\>B, (4)

where YP/sY_{P/s} is the conversion efficiency of a substrate ss to a product PP, expressed as ”quantity of PP formed per quantity of ss consumed”, and mPm_{P} is the cell-specific maintenance coefficient for the product PP. We note that the equation (4) describing the formation of the product PP, is related to the growth rate of BB, and its maintenance.

The process of the transformation of the organic matter to a new liquefied substrate named hydrolyse, is the first and most important step in the process of bio-degradation. It is usually modelled by a first-order equation

dXdt=KHX,\frac{dX}{dt}=-K_{H}X, (5)

where KHK_{H} is the hydrolysis constant. According to alpha ), a fraction α\alpha of the dead microorganisms can constitute a new substrate and is then recycled as a material to be hydrolyzed. In this case, the last equation becomes :

dXdt=KHX+αkdB.\frac{dX}{dt}=-K_{H}\>X+\alpha\>k_{d}\>B. (6)

Moreover, since hydrolysis transforms organic matter into a new substrate, the term KHXK_{H}X is, therefore, a source term in the equation (3) which becomes

dsdt=(1YB/sμ(s)+ms)B+KHX.\frac{ds}{dt}=-\left(\frac{1}{Y_{B/s}}\mu(s)+m_{s}\right)B+K_{H}X. (7)

We thus obtain a four-equations model describing the evolution of the concentrations of the organic matter XX, the biomass BB, the substrate ss, and the product PP:

{dXdt=KHX+αkdB.dBdt=(μ(s)kd)B.dsdt=(1YB/sμ(s)+ms)B+KHX.dPdt=(1YP/sμ(s)+mP)B,\displaystyle\left\{\begin{array}[]{rcll}\displaystyle\frac{dX}{dt}&=&-K_{H}\,X+\alpha\,k_{d}\,B.\\ \displaystyle\frac{dB}{dt}&=&\biggl{(}\mu(s)-k_{d}\biggr{)}\,B.\\ \displaystyle\frac{ds}{dt}&=&-\left(\displaystyle\frac{1}{Y_{B/s}}\,\mu(s)+m_{s}\right)\,B+K_{H}\,X.\\ \displaystyle\frac{dP}{dt}&=&\left(\displaystyle\frac{1}{Y_{P/s}}\,\mu(s)+m_{P}\right)\,B,\end{array}\right. (12)

which can be written as

dVdt=A(V)V,\dfrac{dV}{dt}=A(V)V, (13)

where

V=(XBsP) and A(V)=(KHαkd000μ(s)kd00KH(1YB/sμ(s)+ms)0001YP/sμ(s)+mP00).\displaystyle V=\begin{pmatrix}X\\ B\\ s\\ P\end{pmatrix}\quad\mbox{ and }\quad A(V)=\begin{pmatrix}-K_{H}&\alpha k_{d}&0&0\\ 0&\mu(s)-k_{d}&0&0\\ K_{H}&-\left(\frac{1}{Y_{B/s}}\mu(s)+m_{s}\right)&0&0\\ 0&\frac{1}{Y_{P/s}}\mu(s)+m_{P}&0&0\end{pmatrix}. (14)

We assume that the parameters of this model satisfy the following hypotheses.

Hypothesis 1

The specific growth rate function μ()\mu(\cdot) is of class C1C^{1} with μ(0)=0\mu(0)=0 and μ(s)>0\mu(s)>0 for all s>0s>0.

Hypothesis 2

The coefficients α,kd,YB/s,YP/s,ms\alpha,k_{d},Y_{B/s},Y_{P/s},m_{s} and mPm_{P} satisfy the following conditions.

  1. 1.

    0α<10\leq\alpha<1

  2. 2.

    0<kd<maxsμ(s)0<k_{d}<\displaystyle\max_{s}\mu(s)

  3. 3.

    0<YB/s<10<Y_{B/s}<1\;\; and   0<YP/s<1\;\;0<Y_{P/s}<1

  4. 4.

    ms>0m_{s}>0\;\; and mP>0\;\;m_{P}>0.

All the conditions of Hypothesis 2 are verified in the real biological phenomena. A large number of growth rate functions satisfy the Hypothesis 1. Monod law monod 1942 is the most used one, and many adaptations have been made on this growth model, as Teissier law, Contois law and Dabes et al law law2 , where the growth rate is limited only by the substrate. Other models take into account an inhibition of, at least, one of the variables, as Haldane law, Luong law, Aiba law, Han and Levenspiel law, yano law and luong law law1 . It is known that Trichoderma fungi have no inhibitors for their growth. So, Monod law is suitable for our problem. It takes the form:

μ(s)=μmaxsks+s,\mu(s)=\mu_{\max}\frac{s}{k_{s}+s}, (15)

where μmax\mu_{\max} is the maximum growth rate and ksk_{s} is the half-saturation constant.

3 Equilibrium points and asymptotic behaviour

This section presents an analysis of the system (12). We show that the solution remains positive, determine the equilibrium points, and give the asymptotic behaviour of the solution.

3.1 Positivity of the solution and equilibrium points

Proposition 1.

For any vector (X0,B0,s0,P0)(X_{0},B_{0},s_{0},P_{0}) with non-negative components, the solution of the system (12) with the initial condition (X(0),B(0),s(0),P(0))=(X0,B0,s0,P0)(X(0),B(0),s(0),P(0))=(X_{0},B_{0},s_{0},P_{0}) exists and is unique and non-negative.

Proof: The existence and uniqueness of the solution of the system (12) are given by the Cauchy-Lipschitz theorem walter , since all functions involved in this system are globally Lipschitzian.

In order to show the positivity of the solution of the system (12), let X00X_{0}\geq 0, ,B00,B_{0}\geq 0, s00s_{0}\geq 0 and P00P_{0}\geq 0 be given. We proceed by step, and show, first, that B(t)0B(t)\geq 0, then we deduce that X(t)0X(t)\geq 0, and then finally the positivity result for s(t)s(t) and P(t)P(t).

  1. ⁢1/

    If B0=0B_{0}=0, then the second equation of the system (12) gives B(t)=0B(t)=0 for all t>0.t>0. If B0>0B_{0}>0 and X0X_{0} and s0s_{0} in +\hbox{${\mathbb{R}}$}_{+}, by the uniqueness theorem of the solutions of the Cauchy problem walter , we show that B()B(\cdot) cannot take negative values. Indeed, we suppose there exists t>0t^{{}^{\prime}}>0 such that B(t)=0B(t^{{}^{\prime}})=0. We know (see walter ) that there exists one and only one value of the initial condition B0B_{0} for which the solution satisfies B(t)=0B(t^{{}^{\prime}})=0. But we have already shown that for the initial condition B0=0B_{0}=0, the equality B(t)=0B(t^{{}^{\prime}})=0 is verified. The solution being unique, this is a contradiction with B0>0B_{0}>0. Therefore, for any vector (X0,B0,s0,P0)(X_{0},B_{0},s_{0},P_{0}), with non-negative components, we have B(t)0B(t)\geq 0 for all t>0.t>0.

  2. 2/

    Using the positivity of B()B(\cdot), any solution of the first equation, with (X0,B0,s0,P0)(X_{0},B_{0},s_{0},P_{0}) in +3\hbox{${\mathbb{R}}$}_{+}^{3} satisfies dX(t)dtKHX(t)\displaystyle\frac{dX(t)}{dt}\geq-K_{H}X(t) for all t>0t>0. We deduce, by integration, that X(t)X0eKHtX(t)\geq X_{0}e^{-K_{H}t}, for all t>0t>0. Therefore, for any vector (X0,B0,s0,P0)(X_{0},B_{0},s_{0},P_{0}), with non-negative components, we have X(t)0X(t)\geq 0, for all t>0t>0.

  3. 3/

    From the third equation of (12) and by the positivity of X(t)X(t) we have

    ds(t)dt1YB/s(μ(s(t))+ms)B(t).t>0.\displaystyle\displaystyle\frac{ds(t)}{dt}\geq-\frac{1}{Y_{B/s}}\>\>(\mu(s(t))+m_{s})\>\>B(t).\>\>\>\>\>\>\forall t>0. (16)

    Let us now consider SS the solution of the differential equation

    {dSdt=1YB/s(μ(s)+ms)B.S(0)=s0.\displaystyle\left\{\begin{array}[]{rcll}\displaystyle\frac{dS}{dt}&=&-\displaystyle\frac{1}{Y_{B/s}}\>\>(\mu(s)+m_{s})\>\>B.\\ S(0)&=&s_{0}.\end{array}\right. (19)

    We prove, by the same argument as before, that the solution S(t)S(t) of (19) cannot cross the plane S=0S=0, nor reach 0 in finite time. By the comparison theorem LAKSH 1969 , since s(t)S(t)s(t)\geq S(t), for all t>0t>0, s(t)s(t) is also non-negative for all t>0t>0, and cannot reach 0 in finite time, whatever (X0,B0,s0,P0)(X_{0},B_{0},s_{0},P_{0}) in +3\hbox{${\mathbb{R}}$}_{+}^{3}.

  4. 4/

    By Hypothesis 1, Hypothesis 2 and the positivity of B()B(\cdot), all the coefficients of the last equation of (12) are non-negative. We deduce that dPdt\displaystyle\frac{dP}{dt} is non-negative and so P(t)P(t) is increasing. Therefore according to the fact that P(0)P(0) is in +\hbox{${\mathbb{R}}$}_{+}, P(t)P(t) is also non-negative for all t>0t>0.

An equilibrium point of the non-linear system (12), E=(X,B,s,P)E=(X^{*},B^{*},s^{*},P^{*}), is a solution of the system

A(V)V=0,A(V)V=0, (20)

where AA and VV are defined in (14).

From the second equation of the system (20), we derive that either B=0B=0 or μ(s)=kd\mu(s)=k_{d}.

  • If B=0B=0 then by the first equation, we have X=0X=0 whatever ss\in\hbox{${\mathbb{R}}$}, and the last two equations are automatically verified for any s,Ps,P\in\hbox{${\mathbb{R}}$}. The vector E=(0,0,s,P)E=(0,0,s,P), for s,Ps,P\in\hbox{${\mathbb{R}}$} is then an equilibrium point.

  • If B0B\neq 0, the the fourth equation of (20) gives kdYp/s=mp,\displaystyle\frac{k_{d}}{Y_{p/s}}=-m_{p}, which is not possible because mp>0m_{p}>0 and kdYp/s0\displaystyle\frac{k_{d}}{Y_{p/s}}\geq 0.

So, we have a continuum of equilibrium points given by E=(0,0,s,P)E=(0,0,s,P), for ss and PP in {\mathbb{R}}, whatever the function μ\mu.

Usually, using the linearisation method, the stability of equilibria of ODEs is determined, by the sign of real part of eigenvalues of the Jacobian matrix. For a point E=(0,0,s,P)E=(0,0,s^{*},P^{*}) these eigenvalues are given by

λ1=KH,λ2=μ(s)kd,λ3=0,λ4=0.\displaystyle\lambda_{1}=-K_{H},\qquad\lambda_{2}=\mu(s^{*})-k_{d},\qquad\lambda_{3}=0,\qquad\lambda_{4}=0. (21)

We cannot conclude on the stability or instability, because these equilibrium points are not hyperbolic (the eigenvalues λ3\lambda_{3} and λ4\lambda_{4} are zero). In such situations, one could use the Lyapunov function (see walter , page 319), but it is generally difficult to find such a function, especially for a complex non-linear system. We show in the next section, using Barbalat’s lemma barbalat , that the solutions of the system tend to an equilibrium point when tt tends to ++\infty, which makes it a globally and asymptotically stable equilibrium.

Note that λ20\lambda_{2}\leq 0 if and only if μ(s)Kd\mu(s^{*})\leq K_{d}. In the study of basins of attraction, we will introduce the set of the values of ss such μ(s)Kd\mu(s)\leq K_{d} defined by

𝒮:={s+:μ(s)kd}.\displaystyle\mathcal{S}:=\{s\in\hbox{${\mathbb{R}}$}_{+}:\mu(s)\leq k_{d}\}. (22)

Under Hypothesis 1 and Hypothesis 2, this set has a non-empty interior. For the Monod law, we have

𝒮=[0,λ]withλ=kdksμmaxkd.\displaystyle\mathcal{S}=[0,\lambda]\>\>\>\>\>\>\mbox{with}\>\>\>\>\>\>\lambda=\frac{k_{d}k_{s}}{\mu_{max}-k_{d}}. (23)

3.2 Asymptotic behaviour

In this section, we describe the asymptotic behaviour of the solution of the system (12) and deduce the stability of the equilibrium points. We begin by showing that when time goes to infinity, the solution tends to a point of the form (0,0,s,P)(0,0,s^{*},P^{*}) for some values ss^{*} and PP^{*} which depend on the parameters of the problem and the initial conditions.

Theorem 2.

Let (X0,B0,s0,P0)(X_{0},B_{0},s_{0},P_{0}) be a vector with non-negative components, and suppose Hypothesis 1 and Hypothesis 2 are satisfied.
Then the solutions of the system (12) with the initial condition (X(0),B(0),s(0),P(0))=(X0,B0,s0,P0)(X(0),B(0),s(0),P(0))=(X_{0},B_{0},s_{0},P_{0}) converge asymptotically to an equilibrium point (0,0,s,P)(0,0,s^{*},P^{*}) such that

s\displaystyle s^{\star} \displaystyle\leq s0+(1+msYB/skd)X0+αB0αYB/s\displaystyle s_{0}+\frac{\left(1+\displaystyle\frac{m_{s}Y_{B/s}}{k_{d}}\right)X_{0}+\alpha B_{0}}{\alpha Y_{B/s}} (24)
P\displaystyle P^{*} =\displaystyle= P0+aB0+b(X0+s0s).\displaystyle P_{0}+aB_{0}+b(X_{0}+s_{0}-s^{*}). (25)

The coefficients aa and bb are positive numbers given by the following expressions:

a\displaystyle a =\displaystyle= YP/smP+kdYB/s(αmskd)kdYP/s[1YB/s(αmskd)]\displaystyle\frac{Y_{P/s}m_{P}+k_{d}Y_{B/s}\left(\alpha-\frac{m_{s}}{k_{d}}\right)}{k_{d}Y_{P/s}\left[1-Y_{B/s}\left(\alpha-\frac{m_{s}}{k_{d}}\right)\right]}
b\displaystyle b =\displaystyle= YB/s(YP/smP+kd)kdYP/s[1YB/s(αmskd)].\displaystyle\frac{Y_{B/s}\left(Y_{P/s}m_{P}+k_{d}\right)}{k_{d}Y_{P/s}\left[1-Y_{B/s}\left(\alpha-\frac{m_{s}}{k_{d}}\right)\right]}.

Moreover, when X0X_{0} or s0s_{0} is non-zero, we have s>0s^{\star}>0 and ss^{\star} belongs to 𝒮\mathcal{S}, where 𝒮\mathcal{S} is defined by (23).

Proof: Consider the function Z(t)Z(t) defined by

Z(t)=(1+msYB/skd)X(t)+αB(t)+αYB/ss(t).\displaystyle Z(t)=\left(1+\frac{m_{s}Y_{B/s}}{k_{d}}\right)X(t)+\alpha B(t)+\alpha Y_{B/s}s(t). (26)

This function satisfies some properties that are essential for the rest of the proof. We start by mentioning them before evaluating the limits at infinity of the components of the solution of the system (12).

  • Z(t)0Z(t)\geq 0, for all t0t\geq 0.

  • The derivative of Z(t)Z(t) is given by

    dZdt=KH[(αYB/s1)msYB/skd]X,\frac{dZ}{dt}=K_{H}\left[\left(\alpha Y_{B/s}-1\right)-\frac{m_{s}Y_{B/s}}{k_{d}}\right]X, (27)

    which makes it possible to write Z(t)Z(t) also in the form

    Z(t)=Z(0)+KH[(αYB/s1)msYB/skd]0tX(τ)𝑑τZ(t)=Z(0)+K_{H}\left[\left(\alpha Y_{B/s}-1\right)-\frac{m_{s}Y_{B/s}}{k_{d}}\right]\int^{t}_{0}X(\tau)d\tau (28)
  • There exists 0Z<+0\leq Z\infty<+\infty such that

    limt+Z(t):=Z,\lim_{t\to+\infty}Z(t):=Z\infty, (29)

    indeed Z(t)Z(t) is decreasing (by Hypothesis 2, (αYB/s1)msYB/skd)<0\left(\alpha Y_{B/s}-1\right)-\dfrac{m_{s}Y_{B/s}}{k_{d}})<0) and minorized by zezo.

  • The second derivative of Z(t)Z(t) is given by

    d2Zdt2=KH((αYB/s1)msYB/skd)(KHX+αkdB).\frac{d^{2}Z}{dt^{2}}=K_{H}\left((\alpha Y_{B/s}-1)-\frac{m_{s}Y_{B/s}}{k_{d}}\right)\left(-K_{H}X+\alpha k_{d}B\right). (30)
  1. 1.

    We begin by showing that the solution of (12) converge asymptotically to an equilibrium point.

    Limits of X(t)X(t) and B(t)B(t)
    With respect to the definition of Z(t)Z(t), the limit (29) implies that the variables X(t)X(t), B(t)B(t) and s(t)s(t) are bounded (since they are non-negative). We deduce that the second derivative (30) is bounded, therefore dZdt\displaystyle\frac{dZ}{dt} is uniformly continuous on +\hbox{${\mathbb{R}}$}^{+}. Barbalat’s Lemma barbalat allows us to assert that limt+dZdt=0\displaystyle\underset{t\rightarrow+\infty}{\lim}\frac{dZ}{dt}=0. By (27), we obtain limt+X(t)=0\displaystyle\lim_{t\to+\infty}X(t)=0.
    Similarly, d2Xdt2\displaystyle\frac{d^{2}X}{dt^{2}}, which is expressed as a function of X(t)X(t) and B(t)B(t), is also bounded, and then dXdt\displaystyle\frac{dX}{dt} is uniformly continuous and by Barbalat’s lemma, we deduce limt+dXdt=0\displaystyle\underset{t\rightarrow+\infty}{\lim}\frac{dX}{dt}=0, and therefore, by the first equation of the system and knowing that limt+X(t)=0\displaystyle\lim_{t\to+\infty}X(t)=0, we have limt+B(t)=0\displaystyle\underset{t\rightarrow+\infty}{\lim}B(t)=0.

    Limit of s(t)s(t)
    By (26) and (29) and as we have already shown that limt+X(t)=limt+B(t)=0\displaystyle\lim_{t\to+\infty}X(t)=\displaystyle\lim_{t\to+\infty}B(t)=0, we can affirm that there exists a positive real ss^{\star} such that

    limt+s(t)=s=ZαYB/s.\lim_{t\to+\infty}s(t)=s^{\star}=\frac{Z_{\infty}}{\alpha Y_{B/s}}. (31)

    The function ZZ being decreasing, we have ZZ(0)Z_{\infty}\leq Z(0), and then sZ(0)αYB/ss^{\star}\leq\displaystyle\frac{Z(0)}{\alpha Y_{B/s}}.
    As Z(0)=(1+msYB/skd)X0+αB0+αYB/ss0Z(0)=\left(1+\displaystyle\frac{m_{s}Y_{B/s}}{k_{d}}\right)X_{0}+\alpha B_{0}+\alpha Y_{B/s}s_{0}, we get (24).

    Limit of P(t)P(t)
    Consider Z(t)Z(t) written in the form (28). The function Z(.)Z(.) being bounded, we deduce that it is the same for 0tX(τ)𝑑τ\displaystyle\int^{t}_{0}X(\tau)d\tau, then by using the integration of the system (12) between 0 and tt for t>0t>0 gives

    X(t)\displaystyle X(t) =\displaystyle= X(0)KH0tX(τ)𝑑τ+αkd0tB(τ)𝑑τ\displaystyle X(0)-K_{H}\int_{0}^{t}X(\tau)d\tau+\alpha\,k_{d}\int_{0}^{t}B(\tau)d\tau
    B(t)\displaystyle B(t) =\displaystyle= B(0)+0tμ(s(τ))B(τ)𝑑τkd0tB(τ)𝑑τ\displaystyle B(0)+\int_{0}^{t}\mu(s(\tau))B(\tau)d\tau-k_{d}\int_{0}^{t}B(\tau)d\tau
    s(t)\displaystyle s(t) =\displaystyle= s(0)1YB/s0tμ(s(τ))B(τ)𝑑τms0tB(τ)𝑑τ+KH0tX(τ)𝑑τ\displaystyle s(0)-\displaystyle\frac{1}{Y_{B/s}}\int_{0}^{t}\mu(s(\tau))B(\tau)d\tau-m_{s}\int_{0}^{t}B(\tau)d\tau+K_{H}\int_{0}^{t}X(\tau)d\tau
    P(t)\displaystyle P(t) =\displaystyle= P(0)+0t1YP/sμ(s(τ))B(τ)𝑑τ+mP0tB(τ)𝑑τ.\displaystyle P(0)+\int_{0}^{t}\frac{1}{Y_{P/s}}\mu(s(\tau))B(\tau)d\tau+m_{P}\int_{0}^{t}B(\tau)d\tau.

    We deduce by cascade that 0tB(τ)𝑑τ<+\displaystyle\int^{t}_{0}B(\tau)d\tau<+\infty, 0tμ(s(τ))B(τ)𝑑τ<+\displaystyle\int^{t}_{0}\mu(s(\tau))B(\tau)d\tau<+\infty and that limt+P(t)\displaystyle\lim_{t\to+\infty}P(t) is finite and positive as a limit of a positive and bounded increasing function.

    Taking the limit in the last expressions of X(t)X(t), B(t)B(t) and P(t)P(t), when tt tends to ++\infty, and having limt+X(t)=limt+B(t)=0\displaystyle\lim_{t\to+\infty}X(t)=\displaystyle\lim_{t\to+\infty}B(t)=0 and (24) gives

    0\displaystyle 0 =\displaystyle= X0KH0+X(τ)𝑑τ+αkd0+B(τ)𝑑τ\displaystyle X_{0}-K_{H}\int^{+\infty}_{0}X(\tau)d\tau+\alpha k_{d}\int^{+\infty}_{0}B(\tau)d\tau
    0\displaystyle 0 =\displaystyle= B0kd0+B(τ)𝑑τ+0+μ(s(τ))B(τ)𝑑τ\displaystyle B_{0}-k_{d}\int^{+\infty}_{0}B(\tau)d\tau+\int^{+\infty}_{0}\mu(s(\tau))B(\tau)d\tau
    s\displaystyle s^{*} =\displaystyle= s01YB/s0+μ(s(τ))B(τ)𝑑τ\displaystyle s_{0}-\displaystyle\frac{1}{Y_{B/s}}\int_{0}^{+\infty}\mu(s(\tau))B(\tau)d\tau
    ms0+B(τ)𝑑τ+KH0+X(τ)𝑑τ\displaystyle\qquad\qquad\qquad-m_{s}\int_{0}^{+\infty}B(\tau)d\tau+K_{H}\int_{0}^{+\infty}X(\tau)d\tau
    limt+P(t)\displaystyle\lim_{t\to+\infty}P(t) =\displaystyle= P0+0+1YP/sμ(s(τ))B(τ)𝑑τ+mP0+B(τ)d.τ\displaystyle P_{0}+\int_{0}^{+\infty}\frac{1}{Y_{P/s}}\mu(s(\tau))B(\tau)d\tau+m_{P}\int_{0}^{+\infty}B(\tau)d.\tau (32)

    Linear combinations of the first three equations give

    0tB(τ)𝑑τ=B0+YB/s[(X0+s0s)]kd[1YB/s(αmskd)]\int^{t}_{0}B(\tau)d\tau=\frac{B_{0}+Y_{B/s}\left[(X_{0}+s_{0}-s^{*})\right]}{k_{d}\left[1-Y_{B/s}(\alpha-\frac{m_{s}}{k_{d}})\right]} (33)
    0tμ(s(t))B(τ)𝑑τ=YB/s[B0(αmskd)+(X0+s0s)][1YB/s(αmskd)]\int^{t}_{0}\mu(s(t))B(\tau)d\tau=\frac{Y_{B/s}\left[B_{0}(\alpha-\frac{m_{s}}{k_{d}})+(X_{0}+s_{0}-s^{*})\right]}{\left[1-Y_{B/s}(\alpha-\frac{m_{s}}{k_{d}})\right]} (34)

    By replacing the expressions (33) and (34) in (32), we obtain the expression (25). Note that by Hypothesis 2, [1YB/s(αmskd)]\left[1-Y_{B/s}(\alpha-\dfrac{m_{s}}{k_{d}})\right] is strictly positive.

  2. 2.

    Let us now show that ss^{\star} cannot be equal to 0 when X0X_{0} or s0s_{0} are not zero. Suppose that X00X_{0}\neq 0 or s00s_{0}\neq 0 and that s(t)s(t) tends to 0 when t tends to infinity. Then by continuity, the function μ(s(t))\mu(s(t)) will tend towards zero too, and there would exist TT such that for all tTt\geq T we have

    μ(s(t))YB/sαkdYB/sms.\mu(s(t))\leq Y_{B/s}\alpha k_{d}-Y_{B/s}m_{s}. (35)

    The sum of the first and third equations of the system (12) allows us to write

    ddt(X(t)+s(t))=1YB/s(YB/sαkdYB/smsμ(s))B.\frac{d}{dt}(X(t)+s(t))=\frac{1}{Y_{B/s}}(Y_{B/s}\alpha k_{d}-Y_{B/s}m_{s}-\mu(s))B. (36)

    By (35) we conclude that ddt(X(t)+s(t))0\dfrac{d}{dt}(X(t)+s(t))\geq 0 for allt>T.t>T. By the same argument as the one used in the demonstration of the positivity of the solution, we conclude that if X(0)+s(0)>0X(0)+s(0)>0, the variable X()X(\cdot) or s()s(\cdot) cannot reach 0 in finite time. We then have X(t)+s(t)X(T)+s(T)>0X(t)+s(t)\geq X(T)+s(T)>0 for all t>Tt>T, which is a contradiction with the fact that X(t)+s(t)X(t)+s(t) tends to 0 when tt tends towards ++\infty.

  3. 3.

    We prove now, that ss^{*} belongs to 𝒮\mathcal{S}. Let (X0,s0,B0,P0)(X_{0},s_{0},B_{0},P_{0}) be in +4\hbox{${\mathbb{R}}$}_{+}^{4} with X0>0X_{0}>0 and B0>0B_{0}>0. Suppose that ss^{*}, defined by (24), does not belong to 𝒮\mathcal{S}. Then there would exist T~>0\tilde{T}>0 such that for all t>T~t>\tilde{T} we would have : μ(s(t))kd>η:=μ(s)kd2.\mu(s(t))-k_{d}>\eta:=\frac{\mu(s^{*})-k_{d}}{2}. By (12), we would then have dB(t)dt>ηB(t).\frac{dB(t)}{dt}>\eta B(t). Therefore we would have B(t)>B(s)expη(ts)B(t)>B(s)\exp^{\eta(t-s)} for all t,s>T~,such thatts,t,s>\tilde{T},\>\text{such that}\>\>t\geq s, and then B(.)B(.) cannot converge asymptotically to 0, which is incompatible with the previous results .

3.3 Properties of the equilibrium points

As we have already pointed out, the equilibria of the system (12) are not hyperbolic. We cannot conclude on their stability by using directly the linearization technique and the central variety theorem PERCO . However, using a suitable change of variable we prove the existence of an invariant stable variety in the following theorem.

Theorem 3.

Assume that Assumption 1 and Assumption 2 are satisfied. For each stationary point E=(0,0,s,P)E=(0,0,s^{*},P^{*}) with ss^{*} in int 𝒮\mbox{int }\mathcal{S}, there exists a stable two-dimensional invariant variety \mathcal{M} in +4\hbox{${\mathbb{R}}$}_{+}^{4} such that any solution of (12) with the initial condition in \mathcal{M} converges asymptotically to E.

Proof: The proof of this theorem is based on two changes of variables, the first one is for the variable ss and the second for the variable PP. We obtain a new system associated with the system (12) and whose equilibria are now hyperbolic. To define the change of variable for ss, we fix s>0s^{*}>0 and P>0P^{*}>0 such that μ(s)<kd\mu(s^{*})<k_{d}. Consider the solutions of (12) with B(t)>0B(t)>0, for t[0,+)t\in[0,+\infty), and let

z(t)=X(t)+(s(t)s)B(t)+φ,withφ:=μ(s)YB/s(αkdms)μ(s)kd,z(t)=\dfrac{X(t)+(s(t)-s^{*})}{B(t)}+\varphi,\quad\text{with}\quad\varphi:=\dfrac{\dfrac{\mu(s^{*})}{Y_{B/s}}-(\alpha k_{d}-m_{s})}{\mu(s^{*})-k_{d}}, (37)

which is equivalent to

s(t)=sX(t)+(z(t)φ)B(t).s(t)=s^{*}-X(t)+(z(t)-\varphi)B(t). (38)

The function z(t)z(t) satisfies the equation (see Appendix, page A, for more details)

dzdt=γ(μ(s)μ(s))(μ(s)kd)z\frac{dz}{dt}=-\gamma(\mu(s)-\mu(s^{*}))-(\mu(s)-k_{d})z (39)

with γ:=[kd(1αYB/s)+YB/smsYB/s(kdμ(s))]>0\displaystyle\gamma:=\left[\frac{k_{d}(1-\alpha Y_{B/s})+Y_{B/s}m_{s}}{Y_{B/s}(k_{d}-\mu(s^{*}))}\right]>0, and using (38) we can write μ(s)\mu(s) in terms of the new variable and denote by F(z,X,B)F(z,X,B) the following expression

F(z,X,B):=μ(sX+(zφ)B)F(z,X,B):=\mu\biggl{(}s^{*}-X+(z-\varphi)B\biggr{)} (40)

The second change of variable is defined by setting P>0P^{*}>0 and s>0s^{*}>0 such that μ(s)<kd\mu(s^{*})<k_{d}. For the solutions of (12) with B(t)>0B(t)>0 for t[0,+)t\in[0,+\infty), we define

W(t)=P(t)PB(t)+ω,withω:=μ(s)YP/smPμ(s)kd,W(t)=\frac{P(t)-P^{*}}{B(t)}+\omega,\quad\text{with}\quad\omega:=\dfrac{\dfrac{-\mu(s^{*})}{Y_{P/s}}-m_{P}}{\mu(s^{*})-k_{d}}, (41)

which is equivalent to

P(t)=P+(W(t)ω)B(t).P(t)=P^{*}+(W(t)-\omega)B(t). (42)

The variable W(t)W(t) satisfies the equation (see Appendix, page A, for more details)

dWdt=ϕ(μ(s)μ(s))(μ(s)kd)W,\frac{dW}{dt}=\phi(\mu(s)-\mu(s^{*}))-(\mu(s)-k_{d})W, (43)

with ϕ:=[kd+YP/smPYP/s(kdμ(s))]>0\displaystyle\phi:=\left[\frac{k_{d}+Y_{P/s}m_{P}}{Y_{P/s}(k_{d}-\mu(s^{*}))}\right]>0 .
The system (12) becomes with the variables zz and WW, by using the notation (40)

{dzdt=γ(F(z,X,B)μ(s))(F(z,X,B)kd)z,dXdt=KHX+αkdB,dBdt=(F(z,X,B)kd)B,dWdt=ϕ(F(z,X,B)μ(s))(F(z,X,B)kd)w,\left\{\begin{array}[]{rcll}\displaystyle\frac{dz}{dt}&=&-\gamma\biggl{(}F(z,X,B)-\mu(s^{*})\biggr{)}-\biggl{(}F(z,X,B)-k_{d}\biggr{)}z,\vspace{0.1cm}\\ \displaystyle\frac{dX}{dt}&=&-K_{H}X+\alpha k_{d}B,\vspace{0.1cm}\\ \displaystyle\frac{dB}{dt}&=&\biggl{(}F(z,X,B)-k_{d}\biggr{)}B,\vspace{0.1cm}\\ \displaystyle\frac{dW}{dt}&=&\phi\biggl{(}F(z,X,B)-\mu(s^{*})\biggr{)}-\biggl{(}F(z,X,B)-k_{d}\biggr{)}w,\\ \end{array}\right. (44)

defined in the domain given by

𝒟\displaystyle\mathcal{D} :=\displaystyle:= {(z,X,B,W)×+×+×such that\displaystyle\{(z,X,B,W)\in\hbox{${\mathbb{R}}$}\times\hbox{${\mathbb{R}}$}_{+}\times\hbox{${\mathbb{R}}$}_{+}^{*}\times\hbox{${\mathbb{R}}$}\quad\text{such that}
sX+(zφ)B0andP+(Wω)B0}.\displaystyle\qquad s^{*}-X+(z-\varphi)B\geq 0\quad\text{and}\quad P^{*}+(W-\omega)B\geq 0\}.

By the condition sint𝒮s^{*}\in int\>\mathcal{S}, we have μ(s)kd\mu(s^{*})\neq k_{d}, and we can check that (0,0,0,0)(0,0,0,0) is the only equilibrium of (44) in 𝒟\mathcal{D}. Indeed, if E=(z,X,B,W)E=(z^{*},X^{*},B^{*},W^{*}) is an equilibrium point, from the 3th3^{th} equation, we derive that either B=0B=0 or F(z,X,B)=kdF(z^{*},X^{*},B^{*})=k_{d}.

  • If F(z,X,B)=kdF(z^{*},X^{*},B^{*})=k_{d}, from the 1th1^{th} and the 4th4^{th} equations of the system (44) we deduce that μ(s)=kd\mu(s^{*})=k_{d} which contradicts the condition sint𝒮s^{*}\in int\>\mathcal{S}.

  • If B=0B=0, by the 2th2^{th} equation, we have X=0X=0 whatever s+s^{*}\in\hbox{${\mathbb{R}}$}_{+}. In this case, from the first equation we deduce that we necessarily have z=0z=0 since we cannot have μ(s)=kd\mu(s^{*})=k_{d}.

  • The same reasoning done for the 4th4^{th} equation gives W=0W=0.

Thus the vector E=(0,0,0,0)E=(0,0,0,0) is the only equilibrium point of (44) in 𝒟\mathcal{D} and the Jacobian matrix associated is given by

𝔍(0,0,0,0)=((μ(s)kd)γμ(s)γφμ(s)00KHαkd000μ(s)kd00ϕμ(s)ϕφμ(s)(μ(s)kd))\displaystyle\mathfrak{J}_{(0,0,0,0)}=\begin{pmatrix}-(\mu(s^{*})-k_{d})&\gamma\mu^{{}^{\prime}}(s^{*})&\gamma\varphi\mu^{{}^{\prime}}(s^{*})&0\\ 0&-K_{H}&\alpha k_{d}&0\\ 0&0&\mu(s^{*})-k_{d}&0\\ 0&-\phi\mu^{{}^{\prime}}(s^{*})&-\phi\varphi\mu^{{}^{\prime}}(s^{*})&-(\mu(s^{*})-k_{d})\end{pmatrix} (45)

It admits a double eigenvalue r1r_{1} and two single eigenvalues r2r_{2} and r3r_{3}:

r1=(μ(s)kd),r2=KH,r3=μ(s)kd,r_{1}=-(\mu(s^{*})-k_{d}),\qquad r_{2}=-K_{H},\qquad r_{3}=\mu(s^{*})-k_{d}, (46)

all of them are real and non-zero. According to the Central Variety Theorem Wiggins page 35) and under the condition μ(s)<Kd\mu(s^{*})<K_{d}, the point (0,0,0,0)(0,0,0,0) is thus an hyperbolic equilibrium point with a stable two-dimensional variety \mathcal{L} and an unstable two-dimensional variety 𝒰\mathcal{U} which are respectively positive and negative invariants. So, any trajectory (z(.),X(.),B(.),W(.))(z(.),X(.),B(.),W(.)) in 𝒟\mathcal{D} of (44) in the stable two-dimensional invariant variety 𝒟\mathcal{L}\cap\mathcal{D} converges asymptotically to (0,0,0,0)(0,0,0,0).

Finally, we conclude from the Invariance of Stability (BOOK DIFF , Proposition 6.6, page 283) that by equivalence, there exists a stable two-dimensional invariant variety \mathcal{M} in +4\hbox{${\mathbb{R}}$}_{+}^{4} such that any solution of (12) with the initial condition in \mathcal{M} converges asymptotically to (0,0,s,P)(0,0,s^{*},P^{*}).

4 Numerical tests

This section is dedicated to different numerical tests. As a validation of our model, we compare the results obtained by our system (12) with those obtained in the references ma 2013 and p2006p . After that, we present numerical tests which confirm the theoretical results obtained in the previous sections. The system (12) is an autonomous system. In order to achieve a good accuracy, we choose the Runge-Kutta method of order 4 (RK4) and the Matlab computer software package to solve it.

Validation tests

For the first test we consider the data of Table 1 and Table 2 given in the reference ma 2013 for the first table and the references p2006p and saleh for the second.

μmax\mu_{max} (1/h1/h) ksk_{s} (g/l) kdk_{d} (1/h) YB/sY_{B/s} (g/g) msm_{s} (1/h) s0s_{0} (g/l) B0B_{0} (g/l) P0P_{0} (g/l)
0.096 11.27 0.048 1.19 0.0047 50 15 0
Table 1:
α\alpha kHk_{H} mPm_{P} (1/h) 1YP/s\frac{1}{Y_{P/s}} (g/g) X0X_{0} (g/l)
0.2 0.176 0.002 0.2 45
Table 2:

The evolution curves over time of the organic matter XX, the substrate ss, the biomass BB and the product PP, using the resolution of the system (12) by Matlab are given in Figure 1. We notice that the curve of the substrate ss is very close to that given experimentally in ma 2013 (Figure 3, page 195). This is a validation of our model. The curve of the biomass BB of the same reference in which the results are also experimental converges towards a stationary phase, contrary to our system where it tends towards 0. This is explained by the fact that the experiment in ma 2013 was carried out with a fed-batch fermentation, whereas in the rhizosphere, the culture is discontinuous (batch), and forces the cell to go through exponential, stationary, and finally decay phases.

Refer to caption
Figure 1: Evolution of XX, BB, ss and PP, using the parameters of Table 1, Table 2 and the initial conditions (X0,B0,s0,P0)=(45,15,50,0)(X_{0},B_{0},s_{0},P_{0})=(45,15,50,0)

After this first validation test, we consider another validation test related to the formation of the product, using the data of Table 3 and Table 4 given in the references p2006p , ma 2013 and saleh . In p2006p the authors highlighted the influence of various carbon substrates in the production of cellulase protein using T. reesei 97.177 and Tm3. Cellulase shows the maximum yield of cellulose as a synthetic source. Kinetic studies were also done for growth and production using the Monod equation and Leudeking Piret model respectively. Our results are given in Figure 2 and are close to those of p2006p (Figure 5, page 1879).

Refer to caption
Figure 2: Evolution of XX, BB, ss, PP, using the parameters of Table 3 and Table 4 with (X0,B0,s0,P0)=(17,5,9.5,1.5)(X_{0},B_{0},s_{0},P_{0})=(17,5,9.5,1.5)
μmax\mu_{max} (1/h) ksk_{s} (g/l) 1YP/s\frac{1}{Y_{P/s}} (g/g) mPm_{P} (1/h) B0B_{0} (g/l) s0s_{0} (g/l) P0P_{0} (g/l)
0.2 35.55 0.2 0.002 5 9.5 1.5
Table 3:
α\alpha kHk_{H} YB/sY_{B/s} (g/g) msm_{s} (1/h)
0.2 0.176 1.19 0.0047
Table 4:

Numerical experiments

First test: variation of X0X_{0}. In Theorem 2 we studied the asymptotic behaviour of the system (12). We have highlighted, theoretically, the importance of the initial condition of organic matter in the production of enzymes (cellulase). Indeed we have shown that when time tends to infinity, the solution tends to an equilibrium point (0,0,s,P)(0,0,s^{*},P^{*}) for specific values ss^{*} and PP^{*}, which depend on the parameters of the problem and the initial conditions. In the following test, these theoretical considerations are confirmed numerically.
We fix all the parameters and vary the initial condition of the organic matter X0X_{0}. The solution of the system (12) is performed with the data of Table 1 and Table 2 for initial conditions:

X01=45;X02=90;X03=180;X04=360.\displaystyle X^{1}_{0}=45\quad\mathchar 24635\relax\;\quad X^{2}_{0}=90\quad\mathchar 24635\relax\;\quad X^{3}_{0}=180\quad\mathchar 24635\relax\;\quad X^{4}_{0}=360. (47)
Refer to caption
Figure 3: Evolution of XX for
initial conditions X0iX^{i}_{0} for i=1,,4i=1,...,4 .
Refer to caption
Figure 4: Evolution of BB for
initial conditions X0iX^{i}_{0} for i=1,,4.i=1,...,4.
Refer to caption
Figure 5: Evolution of PP for
initial conditions X0iX^{i}_{0} for i=1,,4.i=1,...,4.
Refer to caption
Figure 6: Evolution of s(.) for
initial conditions X0iX^{i}_{0} for i=1,,4.i=1,...,4.

The simulations in Figures (6), (6), (6) and (6) describe the evolution, in the same time interval, of the variable XiX_{i} , BiB_{i}, sis_{i} and PiP_{i}, respectively associated with the initial conditions X0iX^{i}_{0} for i=1,,4i=1,...,4. We notice as expected in Theorem 2 , that:

  • -

    if we have more initial organic matter, we will have more product formation,

  • -

    whatever the initial condition, the variables XX and BB tend to zero when time becomes large,

  • -

    for an initial condition B0>0B_{0}>0, the variable s(t)s(t) do not tend towards 0 but tends towards a value s>0s^{*}>0, when time becomes large.

The limit values are summarised in Table 5.

X0X_{0} XX^{*} BB^{*} ss^{*} PP^{*}
45 2,7402e-07 8,7454e-10 1,1745 31,8399
90 7,8690e-07 9,1595e-10 1,1761 46,5702
180 7,1684e-07 8,8018e-10 1,1766 76,0315
360 2,3503e-07 8,3535e-10 1,1766 134,9544
Table 5: Limit values of XX, BB, ss and PP for different initial conditions X0X_{0}

Second test: variation of kdk_{d}. We now consider another test allowing us to observe the effect of the variation of kdk_{d} on the evolution of the concentrations of XX, BB, ss and PP. In this test we consider the resolution of the system (12) with the data of Table 1 and Table 2 except for μmax\mu_{\max} which will take the value μmax=0.2\mu_{\max}=0.2, and we make vary the value of kdk_{d} as following

kd1=0.03;kd2=0.09;kd3=0.12;kd4=0.18.k_{d}^{1}=0.03\qquad\mathchar 24635\relax\;\qquad k_{d}^{2}=0.09\qquad\mathchar 24635\relax\;\qquad k_{d}^{3}=0.12\qquad\mathchar 24635\relax\;\qquad k_{d}^{4}=0.18. (48)

The simulations in Figure 10, 10, 10 and Figure 10 represent the evolution, over time, of the variables XX, BB, ss and PP, respectively associated with the values of kdik_{d}^{i} for i=1,4.i=1,...4. The respective curves of XX, BB, ss and PP are presented in the same time interval to visualize their relative behaviours. As modelled in the equations, we notice, as expected, that when the value of kdk_{d} increases:

Refer to caption
Figure 7: Evolution of X()X(\cdot),
B()B(\cdot), s()s(\cdot) and P()P(\cdot) with kd=0.03k_{d}=0.03
Refer to caption
Figure 8: Evolution of X()X(\cdot),
B()B(\cdot), s()s(\cdot) and P()P(\cdot) with kd=0.09k_{d}=0.09
Refer to caption
Figure 9: Evolution of X()X(\cdot),
B()B(\cdot), s()s(\cdot) and P()P(\cdot) with kd=0.12k_{d}=0.12
Refer to caption
Figure 10: Evolution of X()X(\cdot),
B()B(\cdot), s()s(\cdot) and P()P(\cdot) with kd=0.18k_{d}=0.18

The maximum and limit values are summarised in Table (6).

kdk_{d} BmaxB_{max} smaxs_{max} Pmax=PP_{max}=P^{*} ss^{*} BB^{*}
0.03 96.6588 61.2420 32.9487 0.1629 0
0.09 57.1921 63.5208 30.9508 1.7971 0
0.12 38.8395 65.0240 30.3268 3.0865 0
0.18 15 69.1788 24.6089 20.4477 0
Table 6: Maximum value and limit value of BB, ss and PP for different values of kdk_{d}
  • -

    the maximum value of the the concentration of the biomass BB decreases (see Figure 10, 10, 10, 10 and Table 6).

  • -

    the maximum value of the concentration of the substrate ss increases and so (it is natural) it stabilises at a larger value ss^{*} (see Figure 10, 10, 10, 10 and Table 6),

  • -

    The concentration of PP remains an increasing function but the limit value decreases and is reached earlier (see Figure 10, 10, 10, 10 and Table 6).

5 Conclusion

We developed an unstructured mathematical model describing the growth kinetics of Trichoderma and the production of enzymes (cellulase) by degradation of a substrate (cellulose). This model is more complete than the references cited here. We integrated the hydrolysis step of organic matter in our description. Furthermore, using the theorem of stable and unstable varieties, and Barbalat’s lemma, we showed that each trajectory of the system is bounded and converges to one of the non-hyperbolic equilibria depending on the initial conditions. Numerical simulations with data from the literature confirm the theoretical study and validate the model.

Spatialising the model by introducing diffusion would constitute an immediate perspective of this work, which leads to a system of partial differential equations (PDE), of the reaction-diffusion type, instead of ordinary differential equations. We expect to steel have a global attractor. Since Trichoderma has a positive impact on plant growth, it would be interesting to consider a PDE system modeling this impact and analyzing it mathematically.

\bmhead

Acknowledgments The authors warmly thank Pr. Ouazzani Touhami Amina from Laboratoire des Productions végétales, animals et Agro-industries (Ibn Tofail University), for all the discussions they had with her, allowing them to enrich their biological knowledge of Trichoderma.

Appendix A

Determination of the equation (A)

Consider the variable change (37) and introduce the function LL defined by

L(t):=B(t)z(t)=X(t)+(s(t)s)+φB(t).\displaystyle L(t):=B(t)z(t)=X(t)+(s(t)-s^{*})+\varphi B(t). (49)

Then, using the expressions of dXdt\dfrac{dX}{dt}, dBdt\dfrac{dB}{dt} and dsdt\dfrac{ds}{dt} given in the system (12), we have

dLdt\displaystyle\frac{dL}{dt} =\displaystyle= KHX(t)+αkdB(t)+KHX(t)1YB/sμ(s)B(t)msB(t)+φ(μ(s)B(t)kdB(t)).\displaystyle-K_{H}X(t)+\alpha k_{d}B(t)+K_{H}X(t)-\frac{1}{Y_{B/s}}\mu(s)B(t)-m_{s}B(t)+\varphi(\mu(s)B(t)-k_{d}B(t)).
=\displaystyle= (αkdms)B(t)+(1YB/s+φ)μ(s)B(t)φkdB(t).\displaystyle(\alpha k_{d}-m_{s})B(t)+\left(-\frac{1}{Y_{B/s}}+\varphi\right)\mu(s)B(t)-\varphi k_{d}B(t).

Let

η1:=(1YB/s+φ)μ(s)B(t) and η2:=(αkdms)B(t)φkdB(t),\eta_{1}:=\left(-\frac{1}{Y_{B/s}}+\varphi\right)\mu(s)B(t)\quad\mbox{ and }\quad\eta_{2}:=(\alpha k_{d}-m_{s})B(t)-\varphi k_{d}B(t),

which can be written as follows:

η1\displaystyle\eta_{1} =\displaystyle= [1YB/s+μ(s)YB/s(αkdms)μ(s)kd]μ(s)B(t).\displaystyle\left[\frac{-1}{Y_{B/s}}+\frac{\frac{\mu(s^{*})}{Y_{B/s}}-(\alpha k_{d}-m_{s})}{\mu(s^{*})-k_{d}}\right]\mu(s)B(t).
=\displaystyle= [kdαYB/skd+YB/smsYB/s(μ(s)kd)]μ(s)B(t).\displaystyle\left[\frac{k_{d}-\alpha Y_{B/s}k_{d}+Y_{B/s}m_{s}}{Y_{B/s}(\mu(s^{*})-k_{d})}\right]\mu(s)B(t).
=\displaystyle= [kd(1αYB/s)+YB/smsYB/s(kdμ(s))]μ(s)B(t).\displaystyle\left[-\frac{k_{d}(1-\alpha Y_{B/s})+Y_{B/s}m_{s}}{Y_{B/s}(k_{d}-\mu(s^{*}))}\right]\mu(s)B(t).

and

η2\displaystyle\eta_{2} :=(αkdms)B(t)μ(s)YB/s(αkdms)μ(s)kdkdB(t).\displaystyle:=(\alpha k_{d}-m_{s})B(t)-\frac{\frac{\mu(s^{*})}{Y_{B/s}}-(\alpha k_{d}-m_{s})}{\mu(s^{*})-k_{d}}k_{d}B(t).
=[(μ(s)kd)YB/s(αkdms)μ(s)kd+YB/s(αkdms)kdYB/s(μ(s)kd)]B(t).\displaystyle=\left[\frac{(\mu(s^{*})-k_{d})Y_{B/s}(\alpha k_{d}-m_{s})-\mu(s^{*})k_{d}+{Y_{B/s}}(\alpha k_{d}-m_{s})k_{d}}{Y_{B/s}(\mu(s^{*})-k_{d})}\right]B(t).
=[YB/s(αkdms)kdYB/s(μ(s)kd)]μ(s)B(t).\displaystyle=\left[\frac{Y_{B/s}(\alpha k_{d}-m_{s})-k_{d}}{Y_{B/s}(\mu(s^{*})-k_{d})}\right]\mu(s^{*})B(t).
=[kd(1αYB/s)+YB/smsYB/s(kdμ(s))]μ(s)B(t).\displaystyle=\left[\frac{k_{d}(1-\alpha Y_{B/s})+Y_{B/s}m_{s}}{Y_{B/s}(k_{d}-\mu(s^{*}))}\right]\mu(s^{*})B(t).

then

dLdt=η1+η2=γ(μ(s)μ(s))B(t).\displaystyle\frac{dL}{dt}=\eta_{1}+\eta_{2}=-\gamma(\mu(s)-\mu(s^{*}))B(t). (50)

with

γ:=[kd(1αYB/s)+YB/smsYB/s(kdμ(s))]>0.\displaystyle\gamma:=\left[\frac{k_{d}(1-\alpha Y_{B/s})+Y_{B/s}m_{s}}{Y_{B/s}(k_{d}-\mu(s^{*}))}\right]>0.

By (49), we have

dBdtz+Bdzdt=γ(μ(s)μ(s))B(t).\displaystyle\frac{dB}{dt}z+B\frac{dz}{dt}=-\gamma(\mu(s)-\mu(s^{*}))B(t).

Since B(t)B(t) is assumed not to vanish, and using the second equation of (12), we obtain

dzdt=γ(μ(s)μ(s))(μ(s)kd)z\displaystyle\frac{dz}{dt}=-\gamma(\mu(s)-\mu(s^{*}))-(\mu(s)-k_{d})z

which is the equation (A).

Determination of the equation (A)

Consider the variable change (41) and let KK the function defined by

K(t):=B(t)W(t)=(P(t)P)+ωB(t).K(t):=B(t)W(t)=(P(t)-P^{*})+\omega B(t). (51)

Then using the equations of the system (12), we have

dKdt\displaystyle\frac{dK}{dt} =(1YP/sμ(s)+mP)B(t)+ω(μ(s)kd)B(t).\displaystyle=\left(\frac{1}{Y_{P/s}}\mu(s)+m_{P}\right)B(t)+\omega\left(\mu(s)-k_{d}\right)B(t).
=(1YP/s+ω)μ(s)B(t)+(mPωkd)B(t).\displaystyle=\left(\frac{1}{Y_{P/s}}+\omega\right)\mu(s)B(t)+\left(m_{P}-\omega k_{d}\right)B(t).

Let

η3:=(1YP/s+ω)μ(s)B(t) and η4:=(mPωkd)B(t)\eta_{3}:=\left(\frac{1}{Y_{P/s}}+\omega\right)\mu(s)B(t)\quad\mbox{ and }\quad\eta_{4}:=\left(m_{P}-\omega k_{d}\right)B(t)

which can be written as follows:

η3\displaystyle\eta_{3} =[1YP/s+μ(s)YP/smPμ(s)kd]μ(s)B(t).\displaystyle=\left[\frac{1}{Y_{P/s}}+\frac{\frac{-\mu(s^{*})}{Y_{P/s}}-m_{P}}{\mu(s^{*})-k_{d}}\right]\mu(s)B(t).
=[μ(s)kdμ(s)YP/smPYP/s(μ(s)kd)]μ(s)B(t).\displaystyle=\left[\frac{\mu(s^{*})-k_{d}-\mu(s^{*})-Y_{P/s}m_{P}}{Y_{P/s}(\mu(s^{*})-k_{d})}\right]\mu(s)B(t).
=[kd+YP/smPYP/s(kdμ(s))]μ(s)B(t).\displaystyle=\left[\frac{k_{d}+Y_{P/s}m_{P}}{Y_{P/s}(k_{d}-\mu(s^{*}))}\right]\mu(s)B(t).

and

η4\displaystyle\eta_{4} =[(μ(s)kd)YP/smP+μ(s)kd+YP/smPkdYP/s(μ(s)kd)]B(t).\displaystyle=\left[\frac{(\mu(s^{*})-k_{d})Y_{P/s}m_{P}+\mu(s^{*})k_{d}+{Y_{P/s}}m_{P}k_{d}}{Y_{P/s}(\mu(s^{*})-k_{d})}\right]B(t).
=[YP/smP+kdYP/s(μ(s)kd)]μ(s)B(t).\displaystyle=\left[\frac{Y_{P/s}m_{P}+k_{d}}{Y_{P/s}(\mu(s^{*})-k_{d})}\right]\mu(s^{*})B(t).
=[kd+YP/smPYP/s(kdμ(s))]μ(s)B(t).\displaystyle=\left[-\frac{k_{d}+Y_{P/s}m_{P}}{Y_{P/s}(k_{d}-\mu(s^{*}))}\right]\mu(s^{*})B(t).

then

dKdt=η3+η4=ϕ(μ(s)μ(s))B(t).\displaystyle\frac{dK}{dt}=\eta_{3}+\eta_{4}=\phi(\mu(s)-\mu(s^{*}))B(t). (52)

with

ϕ:=[kd+YP/smPYP/s(kdμ(s))]>0.\displaystyle\phi:=\left[\frac{k_{d}+Y_{P/s}m_{P}}{Y_{P/s}(k_{d}-\mu(s^{*}))}\right]>0.

According to (51), we have

dBdtW+BdWdt=ϕ(μ(s)μ(s))B(t).\displaystyle\frac{dB}{dt}W+B\frac{dW}{dt}=\phi(\mu(s)-\mu(s^{*}))B(t).

Using the second equation of (12), we obtain

dWdt=ϕ(μ(s)μ(s))(μ(s)kd)W,\displaystyle\frac{dW}{dt}=\phi(\mu(s)-\mu(s^{*}))-(\mu(s)-k_{d})W,

which is the equation (A).

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